Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCD3P28288 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.73■□□□□ 0.43
ABCD3P28288 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
ABCD3P28288 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCD3P28288 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.73■□□□□ 0.43
ABCD3P28288 AC011298.2-201ENST00000617989 482 ntBASIC17.73■□□□□ 0.43
ABCD3P28288 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.73■□□□□ 0.43
ABCD3P28288 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCD3P28288 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCD3P28288 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.72■□□□□ 0.43
ABCD3P28288 AC091390.4-202ENST00000476426 537 ntBASIC17.72■□□□□ 0.43
ABCD3P28288 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.72■□□□□ 0.43
ABCD3P28288 AC130371.2-201ENST00000619443 611 ntBASIC17.72■□□□□ 0.43
ABCD3P28288 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCD3P28288 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCD3P28288 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
ABCD3P28288 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.71■□□□□ 0.43
ABCD3P28288 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.71■□□□□ 0.43
ABCD3P28288 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 AL355075.4-201ENST00000554988 638 ntBASIC17.71■□□□□ 0.43
ABCD3P28288 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.71■□□□□ 0.43
ABCD3P28288 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
ABCD3P28288 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ABCD3P28288 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCD3P28288 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.7■□□□□ 0.42
ABCD3P28288 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
ABCD3P28288 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
ABCD3P28288 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCD3P28288 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCD3P28288 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.7■□□□□ 0.42
ABCD3P28288 AC008040.2-201ENST00000461049 708 ntBASIC17.7■□□□□ 0.42
ABCD3P28288 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.7■□□□□ 0.42
ABCD3P28288 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
ABCD3P28288 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.7■□□□□ 0.42
ABCD3P28288 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.7■□□□□ 0.42
ABCD3P28288 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCD3P28288 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.7■□□□□ 0.42
ABCD3P28288 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.7■□□□□ 0.42
ABCD3P28288 AL032819.2-201ENST00000624543 2162 ntBASIC17.7■□□□□ 0.42
ABCD3P28288 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCD3P28288 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.7■□□□□ 0.42
ABCD3P28288 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCD3P28288 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ABCD3P28288 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 AC116562.4-201ENST00000641316 2276 ntBASIC17.69■□□□□ 0.42
ABCD3P28288 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCD3P28288 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.69■□□□□ 0.42
ABCD3P28288 UNC93B2-201ENST00000285383 730 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms