Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.02□□□□□ -0.49
APOBP04114 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.02□□□□□ -0.49
APOBP04114 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
APOBP04114 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.02□□□□□ -0.49
APOBP04114 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
APOBP04114 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC12.02□□□□□ -0.49
APOBP04114 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
APOBP04114 AC034232.1-201ENST00000506026 1064 ntBASIC12.02□□□□□ -0.49
APOBP04114 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.02□□□□□ -0.49
APOBP04114 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC12.02□□□□□ -0.49
APOBP04114 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
APOBP04114 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
APOBP04114 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.01□□□□□ -0.49
APOBP04114 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.01□□□□□ -0.49
APOBP04114 AC079776.4-201ENST00000511039 504 ntBASIC12.01□□□□□ -0.49
APOBP04114 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 AL121912.1-201ENST00000603683 238 ntBASIC12.01□□□□□ -0.49
APOBP04114 SPEG-225ENST00000617028 815 ntTSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC12.01□□□□□ -0.49
APOBP04114 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.01□□□□□ -0.49
APOBP04114 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC12.01□□□□□ -0.49
APOBP04114 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC12.01□□□□□ -0.49
APOBP04114 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
APOBP04114 TSPY22P-201ENST00000427496 604 ntBASIC12.01□□□□□ -0.49
APOBP04114 DRAXINP1-201ENST00000437611 948 ntBASIC12.01□□□□□ -0.49
APOBP04114 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC12.01□□□□□ -0.49
APOBP04114 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
APOBP04114 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
APOBP04114 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
APOBP04114 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12□□□□□ -0.49
APOBP04114 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12□□□□□ -0.49
APOBP04114 AC091607.1-201ENST00000490318 1060 ntBASIC12□□□□□ -0.49
APOBP04114 AC005332.3-201ENST00000589904 676 ntBASIC12□□□□□ -0.49
APOBP04114 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
APOBP04114 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC12□□□□□ -0.49
APOBP04114 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12□□□□□ -0.49
APOBP04114 AF238378.1-201ENST00000526806 358 ntBASIC12□□□□□ -0.49
APOBP04114 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12□□□□□ -0.49
APOBP04114 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
APOBP04114 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC12□□□□□ -0.49
APOBP04114 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC12□□□□□ -0.49
APOBP04114 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
APOBP04114 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
APOBP04114 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC12□□□□□ -0.49
APOBP04114 AL121772.3-201ENST00000610840 674 ntBASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms