Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.41■□□□□ 0.38
SPTA1P02549 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.41■□□□□ 0.38
SPTA1P02549 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 KRT18P1-202ENST00000452408 1331 ntBASIC17.41■□□□□ 0.38
SPTA1P02549 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.41■□□□□ 0.38
SPTA1P02549 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.41■□□□□ 0.38
SPTA1P02549 TSPY12P-201ENST00000421279 868 ntBASIC17.41■□□□□ 0.38
SPTA1P02549 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.41■□□□□ 0.38
SPTA1P02549 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.41■□□□□ 0.38
SPTA1P02549 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SPTA1P02549 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SPTA1P02549 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
SPTA1P02549 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 AC091304.2-201ENST00000564639 760 ntBASIC17.4■□□□□ 0.38
SPTA1P02549 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.4■□□□□ 0.38
SPTA1P02549 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.4■□□□□ 0.38
SPTA1P02549 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.4■□□□□ 0.38
SPTA1P02549 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 TMEM179-206ENST00000616017 1645 ntBASIC17.4■□□□□ 0.38
SPTA1P02549 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.4■□□□□ 0.38
SPTA1P02549 KRT18P58-201ENST00000527480 1120 ntBASIC17.4■□□□□ 0.38
SPTA1P02549 AC092865.5-201ENST00000545435 363 ntBASIC17.4■□□□□ 0.38
SPTA1P02549 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
SPTA1P02549 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.4■□□□□ 0.38
SPTA1P02549 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.4■□□□□ 0.38
SPTA1P02549 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SPTA1P02549 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPTA1P02549 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPTA1P02549 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPTA1P02549 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SPTA1P02549 HLA-A-201ENST00000376802 1334 ntBASIC17.39■□□□□ 0.38
SPTA1P02549 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SPTA1P02549 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.39■□□□□ 0.37
SPTA1P02549 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.39■□□□□ 0.37
SPTA1P02549 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 DRAXINP1-201ENST00000437611 948 ntBASIC17.39■□□□□ 0.37
SPTA1P02549 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.39■□□□□ 0.37
SPTA1P02549 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.39■□□□□ 0.37
SPTA1P02549 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.39■□□□□ 0.37
SPTA1P02549 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SPTA1P02549 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.39■□□□□ 0.37
SPTA1P02549 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.39■□□□□ 0.37
SPTA1P02549 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.39■□□□□ 0.37
SPTA1P02549 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPTA1P02549 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SPTA1P02549 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.38■□□□□ 0.37
SPTA1P02549 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 TSSC2-201ENST00000450217 709 ntBASIC17.38■□□□□ 0.37
SPTA1P02549 AP000867.3-201ENST00000524675 377 ntBASIC17.38■□□□□ 0.37
SPTA1P02549 AC140113.2-201ENST00000604370 208 ntBASIC17.38■□□□□ 0.37
SPTA1P02549 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.38■□□□□ 0.37
SPTA1P02549 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.38■□□□□ 0.37
SPTA1P02549 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.38■□□□□ 0.37
SPTA1P02549 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.38■□□□□ 0.37
SPTA1P02549 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.38■□□□□ 0.37
SPTA1P02549 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPTA1P02549 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms