Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.59■■□□□ 1.37
COL4A1P02462 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.59■■□□□ 1.37
COL4A1P02462 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.58■■□□□ 1.37
COL4A1P02462 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.58■■□□□ 1.37
COL4A1P02462 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
COL4A1P02462 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.58■■□□□ 1.37
COL4A1P02462 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
COL4A1P02462 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC23.58■■□□□ 1.37
COL4A1P02462 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
COL4A1P02462 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.58■■□□□ 1.37
COL4A1P02462 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 BUB3-202ENST00000368859 667 ntTSL 3 BASIC23.58■■□□□ 1.37
COL4A1P02462 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 STARP1-201ENST00000397973 869 ntBASIC23.58■■□□□ 1.37
COL4A1P02462 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
COL4A1P02462 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
COL4A1P02462 NEK4P2-201ENST00000580004 1012 ntBASIC23.58■■□□□ 1.37
COL4A1P02462 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
COL4A1P02462 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL4A1P02462 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL4A1P02462 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.57■■□□□ 1.36
COL4A1P02462 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC23.57■■□□□ 1.36
COL4A1P02462 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.57■■□□□ 1.36
COL4A1P02462 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC23.57■■□□□ 1.36
COL4A1P02462 ZNF444P1-201ENST00000559497 298 ntBASIC23.57■■□□□ 1.36
COL4A1P02462 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
COL4A1P02462 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.57■■□□□ 1.36
COL4A1P02462 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.57■■□□□ 1.36
COL4A1P02462 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.57■■□□□ 1.36
COL4A1P02462 AC069148.1-201ENST00000608741 768 ntBASIC23.57■■□□□ 1.36
COL4A1P02462 CLDN5-201ENST00000403084 2357 ntBASIC23.57■■□□□ 1.36
COL4A1P02462 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL4A1P02462 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC23.57■■□□□ 1.36
COL4A1P02462 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.56■■□□□ 1.36
COL4A1P02462 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.56■■□□□ 1.36
COL4A1P02462 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.56■■□□□ 1.36
COL4A1P02462 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.56■■□□□ 1.36
COL4A1P02462 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
COL4A1P02462 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.56■■□□□ 1.36
COL4A1P02462 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC23.56■■□□□ 1.36
COL4A1P02462 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
COL4A1P02462 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A1P02462 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
COL4A1P02462 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
COL4A1P02462 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
COL4A1P02462 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 PHB2-202ENST00000440277 996 ntTSL 5 BASIC23.55■■□□□ 1.36
COL4A1P02462 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.55■■□□□ 1.36
COL4A1P02462 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.55■■□□□ 1.36
COL4A1P02462 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
COL4A1P02462 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC23.55■■□□□ 1.36
COL4A1P02462 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.55■■□□□ 1.36
COL4A1P02462 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 GAS2L1P1-201ENST00000420145 1480 ntBASIC23.55■■□□□ 1.36
COL4A1P02462 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms