Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-393P-201ENST00000384475 107 ntBASIC5.76□□□□□ -1.49
MSX1P28360 RNU6-1093P-201ENST00000391194 107 ntBASIC5.76□□□□□ -1.49
MSX1P28360 RNU6-293P-201ENST00000411259 106 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX1P28360 RBMY1KP-201ENST00000423480 476 ntBASIC5.76□□□□□ -1.49
MSX1P28360 OSTCP4-201ENST00000424397 449 ntBASIC5.76□□□□□ -1.49
MSX1P28360 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 NOTCH2P1-201ENST00000443481 624 ntBASIC5.76□□□□□ -1.49
MSX1P28360 CFL1P4-201ENST00000451536 498 ntBASIC5.76□□□□□ -1.49
MSX1P28360 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.76□□□□□ -1.49
MSX1P28360 AC117503.1-201ENST00000472241 394 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AC108860.1-201ENST00000484521 383 ntBASIC5.76□□□□□ -1.49
MSX1P28360 UBA52P7-201ENST00000486088 380 ntBASIC5.76□□□□□ -1.49
MSX1P28360 HMGB1P21-201ENST00000502313 581 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AC010350.1-201ENST00000504908 231 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AC093815.1-201ENST00000508637 280 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AC096745.1-201ENST00000509945 370 ntBASIC5.76□□□□□ -1.49
MSX1P28360 Y_RNA.673-201ENST00000516306 88 ntBASIC5.76□□□□□ -1.49
MSX1P28360 IGKV3D-34-201ENST00000522638 302 ntBASIC5.76□□□□□ -1.49
MSX1P28360 WBP1LP3-201ENST00000523033 208 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AL138889.2-201ENST00000603883 242 ntBASIC5.76□□□□□ -1.49
MSX1P28360 AL118522.2-201ENST00000616045 615 ntBASIC5.76□□□□□ -1.49
MSX1P28360 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
MSX1P28360 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 AL662795.2-201ENST00000624252 3706 ntBASIC5.75□□□□□ -1.49
MSX1P28360 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX1P28360 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX1P28360 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 Y_RNA.180-201ENST00000363867 113 ntBASIC5.75□□□□□ -1.49
MSX1P28360 Y_RNA.314-201ENST00000365114 102 ntBASIC5.75□□□□□ -1.49
MSX1P28360 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 RNU6-1293P-201ENST00000384077 107 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC004386.1-201ENST00000393214 761 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AP003170.5-201ENST00000397185 335 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AL445529.1-201ENST00000398713 389 ntBASIC5.75□□□□□ -1.49
MSX1P28360 RN7SKP126-201ENST00000411143 300 ntBASIC5.75□□□□□ -1.49
MSX1P28360 RPL21P109-201ENST00000422213 475 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX1P28360 AL354707.3-201ENST00000427308 331 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC093106.2-201ENST00000428212 385 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AP000936.3-201ENST00000438127 255 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC011816.1-201ENST00000441346 546 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AL121871.1-201ENST00000443413 436 ntBASIC5.75□□□□□ -1.49
MSX1P28360 FTH1P25-201ENST00000447665 469 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.75□□□□□ -1.49
MSX1P28360 AC009963.3-201ENST00000458090 486 ntBASIC5.75□□□□□ -1.49
MSX1P28360 RNU6-1218P-201ENST00000458990 108 ntBASIC5.75□□□□□ -1.49
MSX1P28360 RPL9P32-201ENST00000464118 620 ntBASIC5.75□□□□□ -1.49
MSX1P28360 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
MSX1P28360 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 AC022447.4-201ENST00000504053 364 ntBASIC5.75□□□□□ -1.49
MSX1P28360 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX1P28360 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.75□□□□□ -1.49
MSX1P28360 SNORA40.14-201ENST00000516543 86 ntBASIC5.75□□□□□ -1.49
MSX1P28360 Y_RNA.700-201ENST00000516806 100 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 AC040926.1-201ENST00000530195 238 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.75□□□□□ -1.49
MSX1P28360 RN7SL475P-201ENST00000583379 298 ntBASIC5.75□□□□□ -1.49
MSX1P28360 GLYATL1P2-202ENST00000588046 902 ntBASIC5.75□□□□□ -1.49
MSX1P28360 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.75□□□□□ -1.49
MSX1P28360 HMGB1P50-201ENST00000605814 607 ntBASIC5.75□□□□□ -1.49
MSX1P28360 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX1P28360 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX1P28360 RNU6-156P-201ENST00000621869 107 ntBASIC5.75□□□□□ -1.49
MSX1P28360 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX1P28360 GABPAP-201ENST00000419271 1356 ntBASIC5.75□□□□□ -1.49
MSX1P28360 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX1P28360 DNM1P47-203ENST00000571780 12667 ntBASIC5.75□□□□□ -1.49
MSX1P28360 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX1P28360 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX1P28360 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 MTND5P6-201ENST00000422338 1798 ntBASIC5.75□□□□□ -1.49
MSX1P28360 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX1P28360 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX1P28360 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX1P28360 AC110373.1-201ENST00000505994 3505 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms