Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC6.48□□□□□ -1.37
HLA-CQ95604 AC109446.1-201ENST00000566172 220 ntBASIC6.48□□□□□ -1.37
HLA-CQ95604 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC6.48□□□□□ -1.37
HLA-CQ95604 AC104687.2-201ENST00000604442 342 ntBASIC6.48□□□□□ -1.37
HLA-CQ95604 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.48□□□□□ -1.37
HLA-CQ95604 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.48□□□□□ -1.37
HLA-CQ95604 AC007998.5-201ENST00000622938 237 ntBASIC6.48□□□□□ -1.37
HLA-CQ95604 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC6.48□□□□□ -1.37
HLA-CQ95604 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
HLA-CQ95604 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.48□□□□□ -1.37
HLA-CQ95604 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
HLA-CQ95604 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
HLA-CQ95604 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.48□□□□□ -1.37
HLA-CQ95604 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HLA-CQ95604 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
HLA-CQ95604 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 AC093775.1-201ENST00000624154 1868 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 AC010329.1-201ENST00000593903 8328 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC6.47□□□□□ -1.37
HLA-CQ95604 SMIM11P1-201ENST00000369586 178 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 Y_RNA.416-201ENST00000384014 113 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 RNU6-398P-201ENST00000384143 109 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 RNU6-662P-201ENST00000384253 104 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 SNORD51-201ENST00000384320 80 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 AL445529.1-201ENST00000398713 389 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 MTCO2P33-201ENST00000402100 465 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.47□□□□□ -1.37
HLA-CQ95604 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.47□□□□□ -1.37
HLA-CQ95604 PSMA2P3-201ENST00000429685 675 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 AL354710.1-201ENST00000453641 246 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
HLA-CQ95604 RN7SL727P-201ENST00000482164 296 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 RN7SL184P-201ENST00000488308 297 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 RN7SL30P-201ENST00000488416 306 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 Y_RNA.673-201ENST00000516306 88 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC6.47□□□□□ -1.37
HLA-CQ95604 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.47□□□□□ -1.37
HLA-CQ95604 MIR3910-1-201ENST00000580936 111 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC6.47□□□□□ -1.37
HLA-CQ95604 FAM27E4-201ENST00000605259 342 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
HLA-CQ95604 BX322650.1-201ENST00000332359 2143 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.47□□□□□ -1.37
HLA-CQ95604 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.47□□□□□ -1.37
HLA-CQ95604 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 AC007529.1-201ENST00000418574 2178 ntBASIC6.47□□□□□ -1.37
HLA-CQ95604 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HLA-CQ95604 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
HLA-CQ95604 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.46□□□□□ -1.37
HLA-CQ95604 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.46□□□□□ -1.37
HLA-CQ95604 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.46□□□□□ -1.37
HLA-CQ95604 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 PABPC1P7-201ENST00000413177 1513 ntBASIC6.46□□□□□ -1.37
HLA-CQ95604 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 AL161901.1-201ENST00000624954 3425 ntBASIC6.46□□□□□ -1.37
HLA-CQ95604 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HLA-CQ95604 RNU1-46P-201ENST00000384425 164 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 AL645927.1-201ENST00000396783 406 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HLA-CQ95604 RPL21P24-201ENST00000413752 448 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 BMS1P17-202ENST00000416720 316 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HLA-CQ95604 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.46□□□□□ -1.38
HLA-CQ95604 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.46□□□□□ -1.38
HLA-CQ95604 RPS3AP12-201ENST00000443616 753 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 PRELID3BP1-201ENST00000457142 540 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 AC087385.1-201ENST00000475062 312 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 AC026254.2-201ENST00000475295 371 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 RPL21P103-201ENST00000479921 488 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.46□□□□□ -1.38
HLA-CQ95604 AC105758.1-201ENST00000506038 399 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.46□□□□□ -1.38
HLA-CQ95604 GAPDHP62-201ENST00000515313 990 ntBASIC6.46□□□□□ -1.38
HLA-CQ95604 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HLA-CQ95604 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC6.46□□□□□ -1.38
HLA-CQ95604 RPL23AP84-201ENST00000571193 464 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms