Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 HMGN3P1-201ENST00000453847 193 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 ANP32BP2-201ENST00000454525 545 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 RPL23AP14-201ENST00000468281 468 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 RNA5SP135-201ENST00000517019 125 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 RN7SKP234-201ENST00000517173 224 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 OR8K4P-201ENST00000534608 872 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MTCYBP28-201ENST00000566728 1132 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR4509-3-201ENST00000578671 94 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR5708-201ENST00000579723 85 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR4444-1-201ENST00000581696 74 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AP001180.3-201ENST00000582221 145 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR4509-2-201ENST00000583920 94 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR4444-2-201ENST00000584390 74 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 HSPE1P14-201ENST00000605812 302 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 PART1_2.1-201ENST00000612397 250 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 MIR4509-1-201ENST00000618224 94 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC123767.1-202ENST00000620407 817 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AP003355.3-201ENST00000623465 114 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 ZNF663P-202ENST00000641770 1131 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC011978.2-201ENST00000569835 2054 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 ZNF33CP-201ENST00000432492 2030 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 CR381670.1-201ENST00000624291 1693 ntBASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
C9orf40Q8IXQ3 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 DCAF13P3-201ENST00000561147 1334 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 HMGB1P5-201ENST00000255320 642 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RNU6-582P-201ENST00000362989 107 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RNU6-1243P-201ENST00000364028 107 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RNU1-85P-201ENST00000364127 164 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 MIR449B-201ENST00000384995 97 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 MIR670-201ENST00000390142 98 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 BTBD10P2-201ENST00000404779 676 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 MTCO3P31-201ENST00000405526 789 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 U3.39-201ENST00000408569 239 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RN7SKP53-201ENST00000411337 315 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 ELOCP6-201ENST00000429066 328 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RPL21P23-201ENST00000446654 460 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 EXOSC3P1-201ENST00000448649 500 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 BX276092.4-201ENST00000452056 248 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 ELOCP12-201ENST00000458706 328 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC007537.2-201ENST00000472093 511 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC087879.1-201ENST00000474343 374 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 DYNLL1P6-201ENST00000503440 264 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC006499.5-201ENST00000505037 514 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 TPT1P8-201ENST00000510120 555 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RNU6-885P-201ENST00000516607 104 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC103843.2-201ENST00000530523 682 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 OR4C2P-201ENST00000530855 1064 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 BNIP3P40-201ENST00000596017 556 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AC010680.3-201ENST00000604215 520 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AP003973.1-201ENST00000604639 691 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 AL365400.2-201ENST00000605604 902 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 CYCSP41-201ENST00000616920 296 ntBASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
C9orf40Q8IXQ3 U4.6-201ENST00000621618 127 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms