Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL18A1P39060 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.47□□□□□ -1.85
COL18A1P39060 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL18A1P39060 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.47□□□□□ -1.85
COL18A1P39060 RNU6-805P-201ENST00000365643 106 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 RPLP0P7-201ENST00000416050 667 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 MTCO1P39-201ENST00000426148 480 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AL139415.2-201ENST00000431968 163 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.47□□□□□ -1.85
COL18A1P39060 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.47□□□□□ -1.85
COL18A1P39060 PRELID3BP7-201ENST00000503606 469 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AC245166.1-201ENST00000521012 253 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.47□□□□□ -1.85
COL18A1P39060 VN1R81P-201ENST00000602085 372 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.47□□□□□ -1.85
COL18A1P39060 AC010338.1-201ENST00000621823 717 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AC092608.2-201ENST00000624427 218 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 AC009950.2-201ENST00000636548 183 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL18A1P39060 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL18A1P39060 AL353743.4-201ENST00000422653 1547 ntBASIC3.47□□□□□ -1.85
COL18A1P39060 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.46□□□□□ -1.86
COL18A1P39060 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL18A1P39060 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.46□□□□□ -1.86
COL18A1P39060 RPS20P5-201ENST00000434808 360 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 IFNA11P-201ENST00000446352 526 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 DYNLL1P6-201ENST00000503440 264 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.46□□□□□ -1.86
COL18A1P39060 HPRT1P3-201ENST00000539521 576 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 DEFB122-202ENST00000569013 197 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 SNORD39.2-201ENST00000579995 76 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.46□□□□□ -1.86
COL18A1P39060 AC008121.2-201ENST00000614647 523 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 AC134882.1-201ENST00000603738 1676 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
COL18A1P39060 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL18A1P39060 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 AP000526.1-201ENST00000603308 1388 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
COL18A1P39060 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL18A1P39060 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.46□□□□□ -1.86
COL18A1P39060 RNA5SP425-201ENST00000410336 112 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 VN1R31P-201ENST00000417498 730 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 UBE2D3P1-201ENST00000436669 444 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 AL121877.1-201ENST00000453704 622 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 RN7SKP34-201ENST00000516142 244 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.46□□□□□ -1.86
COL18A1P39060 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.46□□□□□ -1.86
COL18A1P39060 AL158196.1-201ENST00000616786 434 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 AC092881.1-201ENST00000638218 2733 ntBASIC3.46□□□□□ -1.86
COL18A1P39060 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL18A1P39060 PWAR6-201ENST00000552334 4618 ntBASIC3.45□□□□□ -1.86
COL18A1P39060 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL18A1P39060 VDAC1P3-201ENST00000434069 851 ntBASIC3.45□□□□□ -1.86
COL18A1P39060 AC092013.1-201ENST00000438795 332 ntBASIC3.45□□□□□ -1.86
COL18A1P39060 AP004217.1-201ENST00000480579 346 ntBASIC3.45□□□□□ -1.86
COL18A1P39060 ATP5F1P5-201ENST00000526403 760 ntBASIC3.45□□□□□ -1.86
COL18A1P39060 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.45□□□□□ -1.86
COL18A1P39060 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
COL18A1P39060 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL18A1P39060 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 AC000123.3-201ENST00000624029 4975 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL18A1P39060 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL18A1P39060 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.44□□□□□ -1.86
COL18A1P39060 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.44□□□□□ -1.86
COL18A1P39060 B3GNT2P1-201ENST00000434960 952 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AC078785.3-201ENST00000476607 425 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL18A1P39060 AC025754.2-201ENST00000606491 432 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AC103810.6-201ENST00000606708 136 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AL159169.2-201ENST00000610061 1269 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AL020991.1-201ENST00000612314 373 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 AL356274.1-201ENST00000617064 410 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL18A1P39060 AC006020.1-201ENST00000420179 1854 ntBASIC3.44□□□□□ -1.86
COL18A1P39060 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
COL18A1P39060 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL18A1P39060 BTF3P7-201ENST00000407097 488 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AC004987.3-201ENST00000413879 771 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL18A1P39060 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.43□□□□□ -1.86
COL18A1P39060 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.43□□□□□ -1.86
COL18A1P39060 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.43□□□□□ -1.86
COL18A1P39060 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.43□□□□□ -1.86
COL18A1P39060 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL18A1P39060 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.43□□□□□ -1.86
COL18A1P39060 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.43□□□□□ -1.86
COL18A1P39060 RNU6-1331P-201ENST00000363658 106 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 MIR181A2-201ENST00000384863 110 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms