Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.35□□□□□ -1.71
HDAC4P56524 AC131235.4-201ENST00000609288 620 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 AC005332.6-201ENST00000613178 446 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 AL445567.2-201ENST00000618935 498 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 AC078883.4-201ENST00000623218 367 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 AC008785.1-201ENST00000624475 456 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HDAC4P56524 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HDAC4P56524 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
HDAC4P56524 ZNF542P-204ENST00000482727 1305 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.35□□□□□ -1.71
HDAC4P56524 MTND5P31-201ENST00000419366 1374 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 LARP1BP1-201ENST00000506036 1359 ntBASIC4.35□□□□□ -1.71
HDAC4P56524 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
HDAC4P56524 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HDAC4P56524 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDAC4P56524 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HDAC4P56524 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
HDAC4P56524 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.34□□□□□ -1.71
HDAC4P56524 MIR383-201ENST00000362257 73 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 RNU1-64P-201ENST00000365443 163 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HDAC4P56524 OR6C69P-201ENST00000394268 893 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC068533.2-201ENST00000411872 306 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 USP9YP26-201ENST00000421008 661 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AL593851.1-201ENST00000426171 157 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 B3GNT2P1-201ENST00000434960 952 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AL445567.1-201ENST00000439121 144 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC122718.1-201ENST00000439448 744 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AL606662.1-201ENST00000445763 553 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 PPIAP3-201ENST00000450588 505 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 RAD23BP3-201ENST00000454157 1152 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 FAM133DP-201ENST00000464802 691 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC087879.1-201ENST00000474343 374 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC012170.1-201ENST00000495139 359 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 PARP4P3-201ENST00000510265 317 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC010486.3-201ENST00000511602 785 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HDAC4P56524 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.34□□□□□ -1.71
HDAC4P56524 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC138915.2-201ENST00000569776 97 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC022655.2-201ENST00000577280 318 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 OR4K7P-201ENST00000580232 945 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC020914.4-201ENST00000597690 277 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC005962.2-201ENST00000611427 652 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC116618.1-201ENST00000634617 774 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.34□□□□□ -1.71
HDAC4P56524 AC107982.1-201ENST00000507171 1300 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDAC4P56524 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDAC4P56524 EXOC5P1-201ENST00000510543 1969 ntBASIC4.34□□□□□ -1.71
HDAC4P56524 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDAC4P56524 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
HDAC4P56524 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
HDAC4P56524 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
HDAC4P56524 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
HDAC4P56524 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDAC4P56524 MTCO1P14-201ENST00000441695 1559 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 NMD3P1-201ENST00000439704 1488 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AC066616.2-201ENST00000559334 1481 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDAC4P56524 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDAC4P56524 RNU6-621P-201ENST00000364752 109 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 RNU6-356P-201ENST00000384140 107 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 SNORA37-201ENST00000384504 129 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HDAC4P56524 RNU4-72P-201ENST00000410754 173 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.33□□□□□ -1.72
HDAC4P56524 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.33□□□□□ -1.72
HDAC4P56524 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.33□□□□□ -1.72
HDAC4P56524 AL050321.1-201ENST00000432363 400 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 MTND5P2-201ENST00000442927 1142 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.33□□□□□ -1.72
HDAC4P56524 MTND1P16-201ENST00000465177 898 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 RN7SL585P-201ENST00000470538 280 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AC006517.1-201ENST00000480485 328 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 GAPDHP36-201ENST00000480688 918 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AC105137.1-201ENST00000484355 562 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.33□□□□□ -1.72
HDAC4P56524 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.33□□□□□ -1.72
HDAC4P56524 AC010587.2-201ENST00000511727 448 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDAC4P56524 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HDAC4P56524 Y_RNA.688-201ENST00000516565 95 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 RNU6-1261P-201ENST00000517194 104 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.33□□□□□ -1.72
HDAC4P56524 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.33□□□□□ -1.72
HDAC4P56524 AP003730.1-201ENST00000524605 285 ntBASIC4.33□□□□□ -1.72
HDAC4P56524 OR5M7P-201ENST00000526140 972 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms