Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC026371.1-201ENST00000551867 419 ntBASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 AC018889.1-201ENST00000605372 397 ntBASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 U2.1-201ENST00000618978 145 ntBASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 AL589994.2-201ENST00000621124 579 ntBASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 MRPL57P1-201ENST00000621486 265 ntBASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
LIMD1Q9UGP4 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC009779.8-201ENST00000641684 4384 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 DDX10P1-201ENST00000448545 1933 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 SNORD62.1-201ENST00000362541 86 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL451142.1-201ENST00000375867 775 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNU6-214P-201ENST00000384130 107 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNU11-4P-201ENST00000391149 133 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL356968.1-201ENST00000416622 474 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC099336.2-201ENST00000422457 254 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL591704.1-201ENST00000432574 275 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC099799.1-201ENST00000439809 192 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC064862.4-201ENST00000442180 334 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 FABP5P13-201ENST00000452144 328 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC002553.3-201ENST00000453002 341 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC234775.1-201ENST00000454247 670 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC099560.2-201ENST00000457554 255 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC245028.2-201ENST00000458673 253 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC022493.2-201ENST00000506122 481 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNU2-69P-201ENST00000516061 100 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNY3P15-201ENST00000516297 97 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNU6-388P-201ENST00000517012 105 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 RNU6-389P-201ENST00000517048 105 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC073581.1-201ENST00000519036 575 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AL355297.3-201ENST00000604082 446 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 SDR42E1P1-201ENST00000611327 477 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 U1.25-201ENST00000614085 162 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC007998.5-201ENST00000622938 237 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC243312.2-201ENST00000623340 601 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC120057.5-201ENST00000623840 154 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC022905.1-201ENST00000503430 3048 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 TNPO1P2-201ENST00000426249 2665 ntBASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIMD1Q9UGP4 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.52□□□□□ -1.36
LIMD1Q9UGP4 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 150.8 ms