Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 Y_RNA.1-201ENST00000352915 104 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RNA5SP507-201ENST00000363603 121 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RNU6-1103P-201ENST00000384150 107 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 MT-TC-201ENST00000387405 66 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC078974.1-201ENST00000411597 223 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 CTSL3P-202ENST00000412179 788 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RPL23AP27-201ENST00000415161 451 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC069157.1-201ENST00000421749 137 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL138785.1-201ENST00000425821 331 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 OR2B7P-201ENST00000429302 934 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC119618.1-201ENST00000434191 222 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 USP9YP15-201ENST00000442391 422 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 BX842559.2-201ENST00000451418 605 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC027673.1-201ENST00000456245 405 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RPSAP50-201ENST00000481955 852 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC114967.1-201ENST00000504890 259 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 COX7A2P2-201ENST00000505291 250 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC005798.1-201ENST00000513715 387 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RN7SKP66-201ENST00000516681 231 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC027308.1-201ENST00000517993 110 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL356432.3-201ENST00000568952 465 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL008729.2-201ENST00000606393 473 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 RPSAP73-201ENST00000614820 330 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC022306.2-201ENST00000617563 647 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC009268.2-201ENST00000621925 457 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AL732618.1-201ENST00000623251 301 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC019226.1-201ENST00000625666 515 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 MIR3688-2-201ENST00000636963 87 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC017104.4-201ENST00000636283 1592 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC011460.1-201ENST00000636268 1834 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SCARNA15-201ENST00000607520 4325 ntBASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 OR4K15-201ENST00000305051 1216 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 RNA5SP305-201ENST00000362665 119 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 RNA5SP223-201ENST00000365174 120 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 Y_RNA.402-201ENST00000383972 102 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 RN7SKP213-201ENST00000410746 298 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 PABPC1P7-201ENST00000413177 1513 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 MTND3P17-201ENST00000416968 344 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 CYCSP10-201ENST00000417973 294 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC009238.2-201ENST00000431026 355 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 CEACAMP7-201ENST00000444105 496 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 Z95327.1-201ENST00000446082 482 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AL591623.2-201ENST00000449978 222 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC108161.1-201ENST00000461060 402 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC023598.1-201ENST00000472521 361 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms