Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 CDH12P2-201ENST00000504393 298 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 RPL7L1P13-201ENST00000511702 739 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 PTP4A1P4-201ENST00000512479 322 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC018442.3-201ENST00000523025 183 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC083923.1-201ENST00000523708 376 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC011626.1-201ENST00000604710 562 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 uc_338.5-201ENST00000611839 155 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC010928.1-201ENST00000592477 1447 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL606537.1-201ENST00000607258 2011 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC011155.1-201ENST00000316512 456 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.157-201ENST00000363638 102 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RNA5SP223-201ENST00000365174 120 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 SNORD42.2-201ENST00000365570 69 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.481-201ENST00000384373 102 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RNU1-149P-201ENST00000390870 161 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RNA5SP339-201ENST00000390987 122 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.605-201ENST00000410577 105 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RN7SKP140-201ENST00000411196 284 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL359704.1-201ENST00000411586 781 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 PIGFP2-201ENST00000421400 651 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CACYBPP1-201ENST00000438592 684 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 HMGB3P12-201ENST00000438745 556 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 NOP56P2-201ENST00000447491 769 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RN7SL184P-201ENST00000488308 297 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC090096.1-201ENST00000489168 390 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC104109.1-201ENST00000498563 436 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC006427.1-201ENST00000514359 712 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL049870.4-201ENST00000555741 486 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RPL10P14-201ENST00000565265 298 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 RN7SL708P-201ENST00000580952 299 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC104010.1-201ENST00000616889 150 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 AC145207.9-201ENST00000623802 325 ntBASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC39Q9UFE4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RNU6-1309P-201ENST00000363305 108 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RNA5SP242-201ENST00000364171 118 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RNA5SP132-201ENST00000364725 118 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.579-201ENST00000390939 94 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RPL23AP29-201ENST00000397284 453 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AL161909.1-201ENST00000397390 712 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 MTCO2P5-201ENST00000422621 426 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms