Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SKP293-201ENST00000411389 296 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AL807761.1-201ENST00000417622 171 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AL592293.2-201ENST00000422292 996 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC137499.1-201ENST00000427602 88 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 NDUFB4P8-201ENST00000435351 367 ntBASIC5.72□□□□□ -1.49
LIG3P49916 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AL596266.1-201ENST00000448132 400 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 RPL7P52-201ENST00000449200 742 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RPL10P17-201ENST00000453852 316 ntBASIC5.72□□□□□ -1.49
LIG3P49916 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 FGF7P4-201ENST00000509595 295 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 RFPL4AP5-201ENST00000514977 504 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG3P49916 OR4R1P-201ENST00000529879 463 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG3P49916 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG3P49916 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 RN7SL802P-201ENST00000577858 299 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RN7SL290P-201ENST00000578661 300 ntBASIC5.72□□□□□ -1.49
LIG3P49916 MIR4795-201ENST00000584182 89 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG3P49916 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 FO393422.1-201ENST00000603908 708 ntBASIC5.72□□□□□ -1.49
LIG3P49916 BX323046.1-201ENST00000610145 535 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AC090607.5-201ENST00000615692 224 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG3P49916 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG3P49916 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 AC114947.2-201ENST00000565748 2125 ntBASIC5.72□□□□□ -1.49
LIG3P49916 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 OR55B1P-203ENST00000641518 2602 ntBASIC5.72□□□□□ -1.49
LIG3P49916 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
LIG3P49916 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
LIG3P49916 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.71□□□□□ -1.49
LIG3P49916 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
LIG3P49916 RNU4-2-201ENST00000365668 141 ntBASIC5.71□□□□□ -1.5
LIG3P49916 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 RNU1-74P-201ENST00000384108 171 ntBASIC5.71□□□□□ -1.5
LIG3P49916 Y_RNA.460-201ENST00000384255 102 ntBASIC5.71□□□□□ -1.5
LIG3P49916 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
LIG3P49916 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
LIG3P49916 EEF1A1P40-201ENST00000412883 573 ntBASIC5.71□□□□□ -1.5
LIG3P49916 RPL12P9-201ENST00000412942 488 ntBASIC5.71□□□□□ -1.5
LIG3P49916 BMS1P17-202ENST00000416720 316 ntBASIC5.71□□□□□ -1.5
LIG3P49916 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 PSMA6P3-201ENST00000428242 164 ntBASIC5.71□□□□□ -1.5
LIG3P49916 RBMY2QP-201ENST00000429799 1147 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 ATP5JP1-201ENST00000431631 322 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 LINC02210-201ENST00000444561 288 ntBASIC5.71□□□□□ -1.5
LIG3P49916 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 BX842559.2-201ENST00000451418 605 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 AL035090.1-201ENST00000454835 332 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AL049874.2-201ENST00000492636 288 ntBASIC5.71□□□□□ -1.5
LIG3P49916 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.71□□□□□ -1.5
LIG3P49916 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 AC090572.1-201ENST00000519251 160 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.71□□□□□ -1.5
LIG3P49916 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 AC027026.1-201ENST00000532323 742 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 SETP2-201ENST00000553886 926 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 AL049872.1-201ENST00000556323 322 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.71□□□□□ -1.5
LIG3P49916 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 MIR3146-201ENST00000580367 79 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG3P49916 AC068790.3-201ENST00000602988 553 ntBASIC5.71□□□□□ -1.5
LIG3P49916 AC115621.1-201ENST00000604653 858 ntBASIC5.71□□□□□ -1.5
LIG3P49916 FRG1KP-201ENST00000623592 341 ntBASIC5.71□□□□□ -1.5
LIG3P49916 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 AL157700.1-201ENST00000561973 1432 ntBASIC5.71□□□□□ -1.5
LIG3P49916 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG3P49916 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
LIG3P49916 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms