Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 STK31-205ENST00000433467 3085 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 HDX-206ENST00000506585 6158 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 AC134882.1-201ENST00000603738 1676 ntBASIC1.79□□□□□ -2.12
APOBP04114 RNU6-859P-201ENST00000362728 107 ntBASIC1.79□□□□□ -2.12
APOBP04114 U3.6-201ENST00000363622 211 ntBASIC1.79□□□□□ -2.12
APOBP04114 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.79□□□□□ -2.12
APOBP04114 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC1.79□□□□□ -2.12
APOBP04114 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 Z98941.1-201ENST00000407764 100 ntBASIC1.79□□□□□ -2.12
APOBP04114 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 ALDH7A1P3-201ENST00000492517 345 ntBASIC1.79□□□□□ -2.12
APOBP04114 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 MUC2-202ENST00000613187 4845 ntBASIC1.79□□□□□ -2.12
APOBP04114 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
APOBP04114 AL161781.1-201ENST00000354277 403 ntBASIC1.79□□□□□ -2.12
APOBP04114 SNORD114-30-201ENST00000364448 72 ntBASIC1.79□□□□□ -2.12
APOBP04114 RANP4-201ENST00000413361 655 ntBASIC1.79□□□□□ -2.12
APOBP04114 HMGN2P3-201ENST00000433603 273 ntBASIC1.79□□□□□ -2.12
APOBP04114 HMGN2P5-201ENST00000436882 273 ntBASIC1.79□□□□□ -2.12
APOBP04114 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC1.79□□□□□ -2.12
APOBP04114 AC073587.1-201ENST00000447093 876 ntBASIC1.79□□□□□ -2.12
APOBP04114 UQCRHP3-201ENST00000451503 251 ntBASIC1.79□□□□□ -2.12
APOBP04114 AP000942.1-201ENST00000463969 747 ntBASIC1.79□□□□□ -2.12
APOBP04114 RNA5SP148-201ENST00000516527 94 ntBASIC1.79□□□□□ -2.12
APOBP04114 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC1.79□□□□□ -2.12
APOBP04114 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 AC079228.1-201ENST00000624774 1049 ntBASIC1.79□□□□□ -2.12
APOBP04114 AC000123.3-201ENST00000624029 4975 ntBASIC1.79□□□□□ -2.12
APOBP04114 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
APOBP04114 AC107027.3-201ENST00000565095 3473 ntBASIC1.79□□□□□ -2.12
APOBP04114 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC1.79□□□□□ -2.12
APOBP04114 AC004972.1-201ENST00000623934 2209 ntBASIC1.78□□□□□ -2.12
APOBP04114 RNU4-44P-201ENST00000363050 141 ntBASIC1.78□□□□□ -2.12
APOBP04114 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC1.78□□□□□ -2.12
APOBP04114 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.78□□□□□ -2.12
APOBP04114 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC1.78□□□□□ -2.12
APOBP04114 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC1.78□□□□□ -2.12
APOBP04114 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC1.78□□□□□ -2.12
APOBP04114 AL392112.1-201ENST00000605115 829 ntBASIC1.78□□□□□ -2.12
APOBP04114 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC1.78□□□□□ -2.12
APOBP04114 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 VN1R48P-201ENST00000448149 1036 ntBASIC1.78□□□□□ -2.12
APOBP04114 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 RPL9P32-201ENST00000464118 620 ntBASIC1.78□□□□□ -2.12
APOBP04114 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC1.78□□□□□ -2.12
APOBP04114 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC1.78□□□□□ -2.12
APOBP04114 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC1.78□□□□□ -2.12
APOBP04114 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC1.78□□□□□ -2.12
APOBP04114 ELL2P4-201ENST00000446870 1376 ntBASIC1.78□□□□□ -2.12
APOBP04114 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 RPS6P2-201ENST00000454208 705 ntBASIC1.78□□□□□ -2.12
APOBP04114 ANP32BP2-201ENST00000454525 545 ntBASIC1.78□□□□□ -2.12
APOBP04114 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC1.78□□□□□ -2.12
APOBP04114 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC1.78□□□□□ -2.12
APOBP04114 AC000403.1-201ENST00000613696 3585 ntBASIC1.78□□□□□ -2.12
APOBP04114 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
APOBP04114 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC1.78□□□□□ -2.13
APOBP04114 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
APOBP04114 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
APOBP04114 AC008725.1-201ENST00000605123 2263 ntBASIC1.78□□□□□ -2.13
APOBP04114 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
APOBP04114 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC1.78□□□□□ -2.13
APOBP04114 PARD3-204ENST00000374768 799 ntTSL 3 BASIC1.78□□□□□ -2.13
APOBP04114 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC1.78□□□□□ -2.13
APOBP04114 RPS20P22-201ENST00000473700 357 ntBASIC1.78□□□□□ -2.13
APOBP04114 AC078817.1-201ENST00000492623 435 ntBASIC1.78□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms