Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC025263.3-201ENST00000622965 1396 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS35Q96QK1 ZNF849P-201ENST00000594711 1566 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS35Q96QK1 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS35Q96QK1 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 RNU6-1243P-201ENST00000364028 107 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 RN7SKP202-201ENST00000410439 330 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AL139247.1-201ENST00000422768 325 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC007389.2-201ENST00000434630 306 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC006994.1-201ENST00000438212 839 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 RPL23AP33-201ENST00000442301 452 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 GXYLT1P1-201ENST00000446657 490 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 UBDP1-202ENST00000457888 382 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AP000873.1-201ENST00000463987 400 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 SNX5P1-201ENST00000505757 1041 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC005798.1-201ENST00000513715 387 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 PRELID3BP4-201ENST00000515476 571 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 RNU6-488P-201ENST00000515918 99 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 RNA5SP208-201ENST00000516156 78 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 RNU4-60P-201ENST00000517239 135 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 HIGD1AP6-201ENST00000521833 279 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC104115.2-201ENST00000523026 687 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC124293.1-201ENST00000530034 493 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC006960.3-201ENST00000561845 705 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC022146.1-201ENST00000595307 847 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC022079.2-201ENST00000619739 566 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 AC106730.3-201ENST00000624568 641 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS35Q96QK1 NCAPGP1-201ENST00000505112 1814 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 MTND5P28-201ENST00000438005 1594 ntBASIC3.72□□□□□ -1.81
VPS35Q96QK1 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
VPS35Q96QK1 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
VPS35Q96QK1 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 U8.11-201ENST00000384699 133 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 U8.12-201ENST00000384701 133 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC246680.2-201ENST00000422106 389 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 USP9YP31-201ENST00000431405 881 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 HMGB3P8-201ENST00000449709 577 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 U8.18-201ENST00000459285 133 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 FTH1P2-201ENST00000466086 412 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC087879.1-201ENST00000474343 374 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AP000893.1-201ENST00000474462 794 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 TRBV12-2-201ENST00000489763 344 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC098799.1-201ENST00000504752 800 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 RNU6-416P-201ENST00000516265 103 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 RN7SKP209-201ENST00000516888 304 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC004217.3-201ENST00000551552 878 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC006130.2-201ENST00000586202 326 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AL109618.2-201ENST00000605527 211 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 AC091905.1-201ENST00000624400 311 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS35Q96QK1 MTND5P3-201ENST00000438536 1800 ntBASIC3.71□□□□□ -1.82
VPS35Q96QK1 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS35Q96QK1 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms