Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.71□□□□□ -1.66
VRK3Q8IV63 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 AC006026.1-201ENST00000444025 1803 ntBASIC4.71□□□□□ -1.66
VRK3Q8IV63 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VRK3Q8IV63 AL022578.1-201ENST00000439330 1433 ntBASIC4.71□□□□□ -1.66
VRK3Q8IV63 AL157700.1-201ENST00000561973 1432 ntBASIC4.71□□□□□ -1.66
VRK3Q8IV63 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VRK3Q8IV63 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 ZNF37BP-203ENST00000452306 1352 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 Y_RNA.89-201ENST00000363031 102 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 Y_RNA.97-201ENST00000363094 102 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 RNU6-1090P-201ENST00000364065 94 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 RNU6-532P-201ENST00000384318 107 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 MIR550A3-201ENST00000390735 95 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 RNU6-780P-201ENST00000391030 104 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AL356057.2-201ENST00000403318 432 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 FCF1P2-201ENST00000415284 583 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC114814.2-201ENST00000419195 485 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC062016.2-201ENST00000420950 676 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 CKS1BP6-201ENST00000424932 240 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 RPL21P110-201ENST00000433345 446 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AL451139.1-201ENST00000434718 346 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 MTND6P5-201ENST00000448266 512 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC010307.1-201ENST00000467206 836 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 MTCO3P9-201ENST00000506989 781 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 HMGB1P28-201ENST00000507778 552 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC091868.1-201ENST00000508746 304 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 SAP18P1-201ENST00000512058 390 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AL671862.1-201ENST00000515851 349 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 BRD9P1-201ENST00000529855 560 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AP001880.2-201ENST00000538233 448 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC133555.2-201ENST00000550213 292 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 FKBP1BP1-201ENST00000553366 325 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 MIR3934-201ENST00000579806 107 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 SS18L2P2-201ENST00000583960 235 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC069304.2-201ENST00000605154 435 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 FAM27B-201ENST00000610601 213 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 PART1_1.1-201ENST00000611761 217 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC009159.1-201ENST00000618386 642 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 AC010338.1-201ENST00000621823 717 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VRK3Q8IV63 DCAF13P1-201ENST00000495256 1330 ntBASIC4.7□□□□□ -1.66
VRK3Q8IV63 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.7□□□□□ -1.66
VRK3Q8IV63 Z95331.1-201ENST00000623075 23112 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
VRK3Q8IV63 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
VRK3Q8IV63 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.69□□□□□ -1.66
VRK3Q8IV63 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 DBF4P1-201ENST00000412976 1892 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.69□□□□□ -1.66
VRK3Q8IV63 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.69□□□□□ -1.66
VRK3Q8IV63 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 RNU6-462P-201ENST00000362659 105 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 Y_RNA.295-201ENST00000364918 102 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VRK3Q8IV63 RNU6-692P-201ENST00000384496 107 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 RNU1-82P-201ENST00000390851 165 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 RPS24P12-201ENST00000402084 394 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 U3.35-201ENST00000408405 208 ntBASIC4.69□□□□□ -1.66
VRK3Q8IV63 RNA5SP113-201ENST00000410486 84 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms