Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
MSX1P28360 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.91□□□□□ -1.46
MSX1P28360 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSX1P28360 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
MSX1P28360 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 AC010615.1-201ENST00000594254 1764 ntBASIC5.9□□□□□ -1.46
MSX1P28360 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.9□□□□□ -1.46
MSX1P28360 AC105235.1-201ENST00000623208 1816 ntBASIC5.9□□□□□ -1.46
MSX1P28360 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
MSX1P28360 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
MSX1P28360 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 RNA5SP433-201ENST00000364491 114 ntBASIC5.9□□□□□ -1.46
MSX1P28360 RNU1-84P-201ENST00000365447 164 ntBASIC5.9□□□□□ -1.46
MSX1P28360 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 RNU6-128P-201ENST00000383976 107 ntBASIC5.9□□□□□ -1.46
MSX1P28360 SNORA19-201ENST00000384737 128 ntBASIC5.9□□□□□ -1.46
MSX1P28360 RNA5SP198-201ENST00000410376 127 ntBASIC5.9□□□□□ -1.46
MSX1P28360 COX6CP15-201ENST00000426313 211 ntBASIC5.9□□□□□ -1.46
MSX1P28360 GAPDHP59-201ENST00000435908 267 ntBASIC5.9□□□□□ -1.46
MSX1P28360 HIGD1AP11-201ENST00000438361 280 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC105402.2-201ENST00000438503 358 ntBASIC5.9□□□□□ -1.46
MSX1P28360 HMGN1P2-201ENST00000445197 310 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC016696.1-201ENST00000446949 318 ntBASIC5.9□□□□□ -1.46
MSX1P28360 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 RPS15AP27-201ENST00000449183 343 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC112492.4-201ENST00000456549 352 ntBASIC5.9□□□□□ -1.46
MSX1P28360 RN7SL39P-201ENST00000462264 297 ntBASIC5.9□□□□□ -1.46
MSX1P28360 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 AL139099.1-201ENST00000497398 403 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC093767.1-201ENST00000504523 156 ntBASIC5.9□□□□□ -1.46
MSX1P28360 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.9□□□□□ -1.46
MSX1P28360 IGKV1D-22-201ENST00000518953 324 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX1P28360 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX1P28360 RRN3P3-201ENST00000549207 578 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AL049779.2-201ENST00000553847 315 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX1P28360 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 AC002310.3-201ENST00000569728 723 ntBASIC5.9□□□□□ -1.46
MSX1P28360 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 MIR3128-201ENST00000581957 66 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC125232.2-201ENST00000592457 143 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC015982.1-201ENST00000608113 465 ntBASIC5.9□□□□□ -1.46
MSX1P28360 EIF3FP1-201ENST00000613970 806 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AC018628.1-201ENST00000624147 3819 ntBASIC5.9□□□□□ -1.46
MSX1P28360 AL606534.2-204ENST00000635008 178 ntBASIC5.9□□□□□ -1.46
MSX1P28360 LINC02495-203ENST00000636704 242 ntBASIC5.9□□□□□ -1.46
MSX1P28360 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.46
MSX1P28360 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX1P28360 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX1P28360 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX1P28360 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX1P28360 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.9□□□□□ -1.47
MSX1P28360 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.47
MSX1P28360 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
MSX1P28360 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSX1P28360 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX1P28360 AL731566.1-201ENST00000620490 1937 ntBASIC5.89□□□□□ -1.47
MSX1P28360 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 GTF2IP4-201ENST00000453092 2054 ntBASIC5.89□□□□□ -1.47
MSX1P28360 SAGE3P-201ENST00000619800 1635 ntBASIC5.89□□□□□ -1.47
MSX1P28360 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 Y_RNA.39-201ENST00000362620 98 ntBASIC5.89□□□□□ -1.47
MSX1P28360 SNORD16-201ENST00000362803 99 ntBASIC5.89□□□□□ -1.47
MSX1P28360 Y_RNA.461-201ENST00000384263 103 ntBASIC5.89□□□□□ -1.47
MSX1P28360 RNU6-550P-201ENST00000391057 101 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AL583834.1-201ENST00000406943 343 ntBASIC5.89□□□□□ -1.47
MSX1P28360 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 RPL7AP14-201ENST00000424041 802 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX1P28360 USMG5P1-201ENST00000425964 177 ntBASIC5.89□□□□□ -1.47
MSX1P28360 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms