Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC2.76□□□□□ -1.97
SPTA1P02549 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
SPTA1P02549 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC2.75□□□□□ -1.97
SPTA1P02549 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SPTA1P02549 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SPTA1P02549 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC2.75□□□□□ -1.97
SPTA1P02549 HMGB3P22-202ENST00000451823 572 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 RPL9P32-201ENST00000464118 620 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 RPL5P30-201ENST00000465511 891 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 SNORA31.21-201ENST00000517180 77 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SPTA1P02549 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC2.75□□□□□ -1.97
SPTA1P02549 AC123768.4-201ENST00000616244 701 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.75□□□□□ -1.97
SPTA1P02549 PWAR6-201ENST00000552334 4618 ntBASIC2.75□□□□□ -1.97
SPTA1P02549 AC017007.4-201ENST00000503353 1352 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
SPTA1P02549 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.74□□□□□ -1.97
SPTA1P02549 AC025445.1-201ENST00000502728 300 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC008549.1-201ENST00000512900 643 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 RNU1-143P-201ENST00000516296 146 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.74□□□□□ -1.97
SPTA1P02549 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC2.74□□□□□ -1.97
SPTA1P02549 MIR5047-201ENST00000579212 100 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 AC009948.4-201ENST00000604692 675 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 U1.23-201ENST00000610293 146 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 uc_338.1-201ENST00000612113 180 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 RNU1-68P-201ENST00000615382 146 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 AL158062.1-201ENST00000619632 745 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 U1.39-201ENST00000621562 146 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 Y_RNA.164-201ENST00000363709 102 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 CYCSP45-201ENST00000402289 315 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC146507.2-201ENST00000460608 476 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 RPL23AP67-201ENST00000465341 474 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC128713.1-201ENST00000471495 306 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC2.74□□□□□ -1.97
SPTA1P02549 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC2.74□□□□□ -1.97
SPTA1P02549 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 AP001004.1-201ENST00000582468 324 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 AL356274.1-201ENST00000617064 410 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 AC108206.1-201ENST00000570186 4159 ntBASIC2.74□□□□□ -1.97
SPTA1P02549 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC2.74□□□□□ -1.97
SPTA1P02549 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SPTA1P02549 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
SPTA1P02549 RNU6-859P-201ENST00000362728 107 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 MIR196B-201ENST00000384852 84 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 RNU4-26P-201ENST00000410270 107 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 SETP15-201ENST00000412724 337 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.73□□□□□ -1.97
SPTA1P02549 AP000936.2-201ENST00000447151 681 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 HMGB1P19-201ENST00000517578 577 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.73□□□□□ -1.97
SPTA1P02549 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 HMGB1P6-201ENST00000569046 646 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.73□□□□□ -1.97
SPTA1P02549 AC046143.2-201ENST00000609789 160 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.73□□□□□ -1.97
SPTA1P02549 MAPK10-253ENST00000641010 4072 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
SPTA1P02549 VTA1P1-201ENST00000414044 866 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 NPM1P24-201ENST00000428039 894 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 MRPS18BP2-201ENST00000434310 759 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC2.73□□□□□ -1.97
SPTA1P02549 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.73□□□□□ -1.97
SPTA1P02549 DNAJC19P1-201ENST00000455312 319 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 RPL23AP70-201ENST00000483361 460 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 AL049874.4-201ENST00000557593 255 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.73□□□□□ -1.97
SPTA1P02549 MIR4498-201ENST00000577599 66 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 AC091905.1-201ENST00000624400 311 ntBASIC2.73□□□□□ -1.97
SPTA1P02549 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.73□□□□□ -1.97
SPTA1P02549 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
SPTA1P02549 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC2.73□□□□□ -1.97
SPTA1P02549 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SPTA1P02549 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.73□□□□□ -1.97
SPTA1P02549 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.72□□□□□ -1.97
SPTA1P02549 AL161431.1-201ENST00000618966 4205 ntBASIC2.72□□□□□ -1.97
SPTA1P02549 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.72□□□□□ -1.97
SPTA1P02549 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SPTA1P02549 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
SPTA1P02549 RNA5SP99-201ENST00000364020 114 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms