Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 TEX21P-204ENST00000641479 1693 ntBASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 AL139246.5-201ENST00000606645 996 ntBASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USH1CQ9Y6N9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TERF1P5-201ENST00000477545 1207 ntBASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USH1CQ9Y6N9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 KRT19P1-201ENST00000405746 1186 ntBASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 YBX1P1-201ENST00000445822 960 ntBASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AC016405.3-201ENST00000607710 860 ntBASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms