Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KRT8P9-201ENST00000558927 1449 ntBASIC20.18■□□□□ 0.82
USP3Q9Y6I4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 AC012306.2-201ENST00000609350 630 ntBASIC20.17■□□□□ 0.82
USP3Q9Y6I4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP3Q9Y6I4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 AC005332.7-201ENST00000614046 2005 ntBASIC20.16■□□□□ 0.82
USP3Q9Y6I4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP3Q9Y6I4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 AC007952.6-201ENST00000573168 2673 ntBASIC20.15■□□□□ 0.82
USP3Q9Y6I4 AC003957.1-201ENST00000625108 2673 ntBASIC20.15■□□□□ 0.82
USP3Q9Y6I4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 AC211429.1-201ENST00000415277 523 ntBASIC20.15■□□□□ 0.82
USP3Q9Y6I4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 AC097493.4-201ENST00000641197 219 ntBASIC20.15■□□□□ 0.82
USP3Q9Y6I4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.15■□□□□ 0.82
USP3Q9Y6I4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP3Q9Y6I4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 CYP2D8P-201ENST00000433633 1490 ntBASIC20.14■□□□□ 0.81
USP3Q9Y6I4 KRT8P11-201ENST00000409686 1436 ntBASIC20.14■□□□□ 0.81
USP3Q9Y6I4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 CRYGFP-201ENST00000418459 633 ntBASIC20.14■□□□□ 0.81
USP3Q9Y6I4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP3Q9Y6I4 SLC25A1P4-201ENST00000567977 778 ntBASIC20.14■□□□□ 0.81
USP3Q9Y6I4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.13■□□□□ 0.81
USP3Q9Y6I4 MFAP1P1-201ENST00000442257 1255 ntBASIC20.13■□□□□ 0.81
USP3Q9Y6I4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms