Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 AL162377.1-201ENST00000618844 1793 ntBASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 AC018445.3-201ENST00000624177 1945 ntBASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 C2orf69P3-201ENST00000565542 1120 ntBASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA3Q9Y5H0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 TUBB8P6-201ENST00000436895 1288 ntBASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 KRT18P57-201ENST00000443599 1254 ntBASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 B3GAT3P1-201ENST00000471720 806 ntBASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 DPP3P2-201ENST00000416030 1696 ntBASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 AC112907.3-201ENST00000577781 2400 ntBASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA3Q9Y5H0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 AL158211.5-201ENST00000623583 2518 ntBASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 AC004980.1-204ENST00000429707 299 ntBASIC18.67■□□□□ 0.58
PCDHGA3Q9Y5H0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms