Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.46
SHROOM4Q9ULL8 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 PRELID1P1-202ENST00000567272 903 ntBASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC36.63■■■■□ 3.45
SHROOM4Q9ULL8 AP000593.1-201ENST00000393668 712 ntBASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 GABARAPL3-202ENST00000624044 1851 ntBASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 AC112907.3-201ENST00000577781 2400 ntBASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
SHROOM4Q9ULL8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC36.61■■■■□ 3.45
SHROOM4Q9ULL8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
SHROOM4Q9ULL8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 LINC01006-201ENST00000333319 2292 ntBASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
SHROOM4Q9ULL8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 SPDYE15P-201ENST00000424157 909 ntBASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
SHROOM4Q9ULL8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 CLDN5-201ENST00000403084 2357 ntBASIC36.57■■■■□ 3.45
SHROOM4Q9ULL8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC36.57■■■■□ 3.44
SHROOM4Q9ULL8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC36.57■■■■□ 3.44
SHROOM4Q9ULL8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC36.56■■■■□ 3.44
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms