Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BLOC1S4Q9NUP1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.03
BLOC1S4Q9NUP1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
BLOC1S4Q9NUP1 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
BLOC1S4Q9NUP1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 AC073195.1-201ENST00000607241 877 ntBASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BLOC1S4Q9NUP1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 IRX1P1-201ENST00000438849 1838 ntBASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
BLOC1S4Q9NUP1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 TSPY23P-201ENST00000440136 739 ntBASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 CR392000.1-201ENST00000624770 1228 ntBASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 KRT16P1-201ENST00000399124 1418 ntBASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 FP475955.4-201ENST00000623131 1990 ntBASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BLOC1S4Q9NUP1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 RPS2P55-201ENST00000397318 883 ntBASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 AC008040.2-201ENST00000461049 708 ntBASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 AC107956.1-201ENST00000494359 873 ntBASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BLOC1S4Q9NUP1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms