Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TREX1Q9NSU2 CROCCP3-202ENST00000420820 1947 ntBASIC19.23■□□□□ 0.67
TREX1Q9NSU2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.23■□□□□ 0.67
TREX1Q9NSU2 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 POU5F1P3-201ENST00000428824 1078 ntBASIC19.23■□□□□ 0.67
TREX1Q9NSU2 AC128676.1-201ENST00000454392 318 ntBASIC19.23■□□□□ 0.67
TREX1Q9NSU2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 AC110285.5-201ENST00000611501 352 ntBASIC19.23■□□□□ 0.67
TREX1Q9NSU2 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TREX1Q9NSU2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 FEM1AP3-201ENST00000403722 1741 ntBASIC19.22■□□□□ 0.67
TREX1Q9NSU2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TREX1Q9NSU2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.21■□□□□ 0.67
TREX1Q9NSU2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TREX1Q9NSU2 KRT8P41-201ENST00000533985 1514 ntBASIC19.2■□□□□ 0.66
TREX1Q9NSU2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms