Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 AC239809.2-201ENST00000415381 517 ntBASIC20.7■□□□□ 0.9
SIX2Q9NPC8 AC133681.1-201ENST00000465482 601 ntBASIC20.7■□□□□ 0.9
SIX2Q9NPC8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 AL160286.2-201ENST00000567150 934 ntBASIC20.7■□□□□ 0.9
SIX2Q9NPC8 AC004264.1-201ENST00000608354 794 ntBASIC20.7■□□□□ 0.9
SIX2Q9NPC8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 AC006058.3-201ENST00000606217 1069 ntBASIC20.69■□□□□ 0.9
SIX2Q9NPC8 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 FEM1AP3-201ENST00000403722 1741 ntBASIC20.69■□□□□ 0.9
SIX2Q9NPC8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX2Q9NPC8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 KRT16P5-201ENST00000455284 522 ntBASIC20.68■□□□□ 0.9
SIX2Q9NPC8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 KRT8P41-201ENST00000533985 1514 ntBASIC20.68■□□□□ 0.9
SIX2Q9NPC8 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX2Q9NPC8 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 CD99P1-205ENST00000527459 561 ntBASIC20.67■□□□□ 0.9
SIX2Q9NPC8 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX2Q9NPC8 AL138781.2-201ENST00000617896 1843 ntBASIC20.67■□□□□ 0.9
SIX2Q9NPC8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TSPY23P-201ENST00000440136 739 ntBASIC20.66■□□□□ 0.9
SIX2Q9NPC8 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 AC128676.1-201ENST00000454392 318 ntBASIC20.66■□□□□ 0.9
SIX2Q9NPC8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.66■□□□□ 0.9
SIX2Q9NPC8 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms