Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AL049796.1-201ENST00000565336 1766 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 DUX4L26-201ENST00000489078 1255 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 GUK1-204ENST00000366721 689 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC087388.1-201ENST00000571370 1112 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC130371.2-201ENST00000619443 611 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PTBP1P-201ENST00000554374 1601 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 COX11P1-201ENST00000489116 835 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AL138966.2-201ENST00000621997 464 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 KRT8P17-201ENST00000453110 1448 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC117947.1-201ENST00000427448 529 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 LINC01465-201ENST00000408887 1940 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC004980.1-204ENST00000429707 299 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 USF2-205ENST00000594064 1179 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PNN-205ENST00000556530 601 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CR392000.1-201ENST00000624770 1228 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SPDYE15P-201ENST00000424157 909 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AC091390.4-202ENST00000476426 537 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AC139887.4-201ENST00000607877 719 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms