Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AC092368.3-202ENST00000574180 1591 ntBASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AC083880.1-201ENST00000608266 535 ntBASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AL109923.1-201ENST00000618799 583 ntBASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 HLA-B-256ENST00000639848 1089 ntBASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP4Q8N3C7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP4Q8N3C7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLIP4Q8N3C7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18■□□□□ 0.47
CLIP4Q8N3C7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLIP4Q8N3C7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms