Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 PRELID1P1-202ENST00000567272 903 ntBASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 AC092329.2-201ENST00000598402 547 ntBASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 AC092597.1-201ENST00000487352 616 ntBASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNKSR3Q6P9H4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNKSR3Q6P9H4 AL691432.2-201ENST00000607222 2038 ntBASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 TSSC2-201ENST00000450217 709 ntBASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNKSR3Q6P9H4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 RN7SL510P-201ENST00000581311 263 ntBASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 AL121672.3-201ENST00000608644 468 ntBASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNKSR3Q6P9H4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 AC246785.2-201ENST00000432512 513 ntBASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 BX276092.5-203ENST00000456199 560 ntBASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
CNKSR3Q6P9H4 AC011498.5-201ENST00000592027 486 ntBASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms