Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
KRT40Q6A162 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
KRT40Q6A162 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.33■■□□□ 1.16
KRT40Q6A162 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.33■■□□□ 1.16
KRT40Q6A162 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
KRT40Q6A162 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
KRT40Q6A162 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
KRT40Q6A162 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KRT40Q6A162 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
KRT40Q6A162 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KRT40Q6A162 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.32■■□□□ 1.16
KRT40Q6A162 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC22.32■■□□□ 1.16
KRT40Q6A162 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.32■■□□□ 1.16
KRT40Q6A162 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
KRT40Q6A162 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
KRT40Q6A162 RCN1P1-201ENST00000400413 996 ntBASIC22.32■■□□□ 1.16
KRT40Q6A162 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.32■■□□□ 1.16
KRT40Q6A162 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.32■■□□□ 1.16
KRT40Q6A162 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.32■■□□□ 1.16
KRT40Q6A162 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
KRT40Q6A162 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.32■■□□□ 1.16
KRT40Q6A162 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.32■■□□□ 1.16
KRT40Q6A162 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC22.32■■□□□ 1.16
KRT40Q6A162 BX323043.1-201ENST00000641006 1765 ntBASIC22.32■■□□□ 1.16
KRT40Q6A162 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 LINC01465-201ENST00000408887 1940 ntBASIC22.31■■□□□ 1.16
KRT40Q6A162 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 AC239809.2-201ENST00000415381 517 ntBASIC22.31■■□□□ 1.16
KRT40Q6A162 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 C1QL1P1-201ENST00000568105 661 ntBASIC22.31■■□□□ 1.16
KRT40Q6A162 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 AL445228.2-201ENST00000605589 952 ntBASIC22.31■■□□□ 1.16
KRT40Q6A162 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.31■■□□□ 1.16
KRT40Q6A162 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
KRT40Q6A162 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
KRT40Q6A162 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.31■■□□□ 1.16
KRT40Q6A162 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
KRT40Q6A162 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.31■■□□□ 1.16
KRT40Q6A162 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
KRT40Q6A162 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
KRT40Q6A162 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.3■■□□□ 1.16
KRT40Q6A162 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
KRT40Q6A162 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 AC004264.1-201ENST00000608354 794 ntBASIC22.3■■□□□ 1.16
KRT40Q6A162 AC124016.1-201ENST00000609552 612 ntBASIC22.3■■□□□ 1.16
KRT40Q6A162 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
KRT40Q6A162 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
KRT40Q6A162 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.3■■□□□ 1.16
KRT40Q6A162 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC22.29■■□□□ 1.16
KRT40Q6A162 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 AC141586.3-201ENST00000562166 1838 ntBASIC22.29■■□□□ 1.16
KRT40Q6A162 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.29■■□□□ 1.16
KRT40Q6A162 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.29■■□□□ 1.16
KRT40Q6A162 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
KRT40Q6A162 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
KRT40Q6A162 AC087499.1-201ENST00000418141 1075 ntBASIC22.29■■□□□ 1.16
KRT40Q6A162 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
KRT40Q6A162 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
KRT40Q6A162 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.29■■□□□ 1.16
KRT40Q6A162 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
KRT40Q6A162 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.29■■□□□ 1.16
KRT40Q6A162 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
KRT40Q6A162 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms