Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 AL845331.1-201ENST00000424978 1190 ntBASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 AC012615.1-201ENST00000565797 1299 ntBASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 AC092119.3-201ENST00000612618 583 ntBASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CCDC88AQ3V6T2 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC88AQ3V6T2 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AP000593.1-201ENST00000393668 712 ntBASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 CKBP1-201ENST00000565489 1086 ntBASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC88AQ3V6T2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC88AQ3V6T2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 WDR6-223ENST00000627177 207 ntTSL 2 BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC88AQ3V6T2 AL162377.1-201ENST00000618844 1793 ntBASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 AC016734.2-201ENST00000624325 1377 ntBASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 AC006538.3-201ENST00000612495 578 ntBASIC23.58■■□□□ 1.36
CCDC88AQ3V6T2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms