Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 Z85996.1-201ENST00000494644 937 ntBASIC17.24■□□□□ 0.35
H3F3AP84243 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.24■□□□□ 0.35
H3F3AP84243 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
H3F3AP84243 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.24■□□□□ 0.35
H3F3AP84243 AC026271.3-201ENST00000571884 352 ntBASIC17.24■□□□□ 0.35
H3F3AP84243 CD177P1-201ENST00000606252 935 ntBASIC17.24■□□□□ 0.35
H3F3AP84243 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.24■□□□□ 0.35
H3F3AP84243 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.24■□□□□ 0.35
H3F3AP84243 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
H3F3AP84243 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.24■□□□□ 0.35
H3F3AP84243 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 AL032819.2-201ENST00000624543 2162 ntBASIC17.23■□□□□ 0.35
H3F3AP84243 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
H3F3AP84243 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
H3F3AP84243 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.23■□□□□ 0.35
H3F3AP84243 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 MIR718-201ENST00000390190 70 ntBASIC17.23■□□□□ 0.35
H3F3AP84243 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.23■□□□□ 0.35
H3F3AP84243 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.23■□□□□ 0.35
H3F3AP84243 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.23■□□□□ 0.35
H3F3AP84243 AC113410.3-201ENST00000623366 203 ntBASIC17.23■□□□□ 0.35
H3F3AP84243 CR392000.1-201ENST00000624770 1228 ntBASIC17.23■□□□□ 0.35
H3F3AP84243 AL031985.4-201ENST00000642138 673 ntBASIC17.23■□□□□ 0.35
H3F3AP84243 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.23■□□□□ 0.35
H3F3AP84243 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
H3F3AP84243 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 KRT8P41-201ENST00000533985 1514 ntBASIC17.22■□□□□ 0.35
H3F3AP84243 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
H3F3AP84243 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
H3F3AP84243 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 FAM197Y1-201ENST00000421178 764 ntBASIC17.22■□□□□ 0.35
H3F3AP84243 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.22■□□□□ 0.35
H3F3AP84243 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.22■□□□□ 0.35
H3F3AP84243 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.22■□□□□ 0.35
H3F3AP84243 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.22■□□□□ 0.35
H3F3AP84243 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.22■□□□□ 0.35
H3F3AP84243 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.22■□□□□ 0.35
H3F3AP84243 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
H3F3AP84243 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
H3F3AP84243 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.22■□□□□ 0.35
H3F3AP84243 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
H3F3AP84243 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.21■□□□□ 0.35
H3F3AP84243 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.21■□□□□ 0.35
H3F3AP84243 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
H3F3AP84243 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 213 ms