Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 DUX4L18-201ENST00000553347 1267 ntBASIC20.2■□□□□ 0.82
CBX1P83916 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX1P83916 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.2■□□□□ 0.82
CBX1P83916 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.2■□□□□ 0.82
CBX1P83916 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CBX1P83916 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CBX1P83916 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CBX1P83916 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX1P83916 AC009237.14-201ENST00000609975 1594 ntBASIC20.2■□□□□ 0.82
CBX1P83916 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 GNAS-203ENST00000306120 1878 ntBASIC20.2■□□□□ 0.82
CBX1P83916 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX1P83916 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.2■□□□□ 0.82
CBX1P83916 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CBX1P83916 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.19■□□□□ 0.82
CBX1P83916 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CBX1P83916 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CBX1P83916 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX1P83916 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 AC022211.2-201ENST00000585075 2527 ntBASIC20.19■□□□□ 0.82
CBX1P83916 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX1P83916 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.19■□□□□ 0.82
CBX1P83916 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX1P83916 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CBX1P83916 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.19■□□□□ 0.82
CBX1P83916 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.19■□□□□ 0.82
CBX1P83916 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 AC108860.2-201ENST00000562760 2183 ntBASIC20.19■□□□□ 0.82
CBX1P83916 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CBX1P83916 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CBX1P83916 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.18■□□□□ 0.82
CBX1P83916 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.18■□□□□ 0.82
CBX1P83916 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CBX1P83916 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CBX1P83916 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC20.18■□□□□ 0.82
CBX1P83916 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX1P83916 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX1P83916 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX1P83916 AC133637.1-201ENST00000624115 1537 ntBASIC20.17■□□□□ 0.82
CBX1P83916 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.17■□□□□ 0.82
CBX1P83916 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms