Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.3■□□□□ 0.52
LIM2P55344 TNXA-203ENST00000507684 2038 ntBASIC18.3■□□□□ 0.52
LIM2P55344 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.29■□□□□ 0.52
LIM2P55344 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 RPS2P4-201ENST00000476944 856 ntBASIC18.29■□□□□ 0.52
LIM2P55344 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.29■□□□□ 0.52
LIM2P55344 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.29■□□□□ 0.52
LIM2P55344 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.29■□□□□ 0.52
LIM2P55344 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.29■□□□□ 0.52
LIM2P55344 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.29■□□□□ 0.52
LIM2P55344 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.29■□□□□ 0.52
LIM2P55344 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIM2P55344 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.28■□□□□ 0.52
LIM2P55344 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
LIM2P55344 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.28■□□□□ 0.52
LIM2P55344 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.28■□□□□ 0.52
LIM2P55344 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.28■□□□□ 0.52
LIM2P55344 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 RPS2P55-201ENST00000397318 883 ntBASIC18.28■□□□□ 0.52
LIM2P55344 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 KSR1P1-201ENST00000446298 240 ntBASIC18.28■□□□□ 0.52
LIM2P55344 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.28■□□□□ 0.52
LIM2P55344 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 AC107956.1-201ENST00000494359 873 ntBASIC18.28■□□□□ 0.52
LIM2P55344 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.28■□□□□ 0.52
LIM2P55344 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 AL445675.2-201ENST00000620291 557 ntBASIC18.28■□□□□ 0.52
LIM2P55344 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.28■□□□□ 0.52
LIM2P55344 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.28■□□□□ 0.52
LIM2P55344 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.28■□□□□ 0.52
LIM2P55344 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIM2P55344 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.27■□□□□ 0.52
LIM2P55344 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.27■□□□□ 0.52
LIM2P55344 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.27■□□□□ 0.52
LIM2P55344 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIM2P55344 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 AC012618.2-201ENST00000428058 849 ntBASIC18.27■□□□□ 0.52
LIM2P55344 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIM2P55344 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.27■□□□□ 0.52
LIM2P55344 AC008550.1-201ENST00000511500 884 ntBASIC18.27■□□□□ 0.52
LIM2P55344 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.27■□□□□ 0.52
LIM2P55344 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.27■□□□□ 0.52
LIM2P55344 AL160286.2-201ENST00000567150 934 ntBASIC18.27■□□□□ 0.52
LIM2P55344 Z99916.2-201ENST00000604037 246 ntBASIC18.27■□□□□ 0.52
LIM2P55344 AC073195.1-201ENST00000607241 877 ntBASIC18.27■□□□□ 0.52
LIM2P55344 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.27■□□□□ 0.52
LIM2P55344 AP006294.2-201ENST00000641667 209 ntBASIC18.27■□□□□ 0.52
LIM2P55344 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
LIM2P55344 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIM2P55344 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIM2P55344 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIM2P55344 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIM2P55344 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIM2P55344 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIM2P55344 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LIM2P55344 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
LIM2P55344 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.26■□□□□ 0.51
LIM2P55344 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.26■□□□□ 0.51
LIM2P55344 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIM2P55344 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIM2P55344 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.26■□□□□ 0.51
LIM2P55344 AC233702.5-201ENST00000584107 538 ntBASIC18.26■□□□□ 0.51
LIM2P55344 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms