Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
PTPN4P29074 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 AC020916.1-201ENST00000587762 1774 ntBASIC19.31■□□□□ 0.68
PTPN4P29074 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PTPN4P29074 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.31■□□□□ 0.68
PTPN4P29074 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.3■□□□□ 0.68
PTPN4P29074 AC105020.6-201ENST00000621523 1217 ntBASIC19.3■□□□□ 0.68
PTPN4P29074 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 AC135050.7-201ENST00000624508 2218 ntBASIC19.3■□□□□ 0.68
PTPN4P29074 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN4P29074 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.3■□□□□ 0.68
PTPN4P29074 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN4P29074 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PTPN4P29074 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PTPN4P29074 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
PTPN4P29074 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN4P29074 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PTPN4P29074 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PTPN4P29074 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.29■□□□□ 0.68
PTPN4P29074 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PTPN4P29074 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PTPN4P29074 RPS2P4-201ENST00000476944 856 ntBASIC19.29■□□□□ 0.68
PTPN4P29074 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.29■□□□□ 0.68
PTPN4P29074 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN4P29074 AC020763.4-201ENST00000623414 4170 ntBASIC19.29■□□□□ 0.68
PTPN4P29074 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.28■□□□□ 0.68
PTPN4P29074 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.28■□□□□ 0.68
PTPN4P29074 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 KRT17P3-201ENST00000420566 1262 ntBASIC19.28■□□□□ 0.68
PTPN4P29074 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.28■□□□□ 0.68
PTPN4P29074 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.28■□□□□ 0.68
PTPN4P29074 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.28■□□□□ 0.68
PTPN4P29074 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PTPN4P29074 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.28■□□□□ 0.68
PTPN4P29074 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 PCDHB18P-201ENST00000524813 2368 ntBASIC19.28■□□□□ 0.68
PTPN4P29074 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTPN4P29074 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN4P29074 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PTPN4P29074 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PTPN4P29074 AC018470.1-201ENST00000624790 3129 ntBASIC19.27■□□□□ 0.68
PTPN4P29074 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PTPN4P29074 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.27■□□□□ 0.68
PTPN4P29074 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms