Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 TMEM191A-211ENST00000637163 1067 ntBASIC14.66□□□□□ -0.06
HLA-DMBP28068 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.66□□□□□ -0.06
HLA-DMBP28068 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 AC083880.1-201ENST00000608266 535 ntBASIC14.65□□□□□ -0.06
HLA-DMBP28068 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DMBP28068 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DMBP28068 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 GATS-209ENST00000454084 1030 ntTSL 3 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 MYC-209ENST00000641252 345 ntBASIC14.64□□□□□ -0.07
HLA-DMBP28068 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SDHAP1-207ENST00000440850 2000 ntBASIC14.64□□□□□ -0.07
HLA-DMBP28068 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DMBP28068 AC141586.3-201ENST00000562166 1838 ntBASIC14.64□□□□□ -0.07
HLA-DMBP28068 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 AC092368.3-202ENST00000574180 1591 ntBASIC14.64□□□□□ -0.07
HLA-DMBP28068 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC14.64□□□□□ -0.07
HLA-DMBP28068 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms