Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
HMGB1P09429 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.74■■□□□ 1.23
HMGB1P09429 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 KRT18P29-201ENST00000397031 1267 ntBASIC22.73■■□□□ 1.23
HMGB1P09429 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 AL353807.1-201ENST00000427475 662 ntBASIC22.73■■□□□ 1.23
HMGB1P09429 TSPY21P-201ENST00000433481 731 ntBASIC22.73■■□□□ 1.23
HMGB1P09429 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.73■■□□□ 1.23
HMGB1P09429 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 GLRB-205ENST00000512619 728 ntTSL 3 BASIC22.73■■□□□ 1.23
HMGB1P09429 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.73■■□□□ 1.23
HMGB1P09429 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
HMGB1P09429 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
HMGB1P09429 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGB1P09429 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGB1P09429 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.73■■□□□ 1.23
HMGB1P09429 AC098818.2-201ENST00000564925 2320 ntBASIC22.73■■□□□ 1.23
HMGB1P09429 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.72■■□□□ 1.23
HMGB1P09429 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC22.72■■□□□ 1.23
HMGB1P09429 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC22.72■■□□□ 1.23
HMGB1P09429 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.72■■□□□ 1.23
HMGB1P09429 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.72■■□□□ 1.23
HMGB1P09429 NIFKP9-201ENST00000419265 221 ntBASIC22.72■■□□□ 1.23
HMGB1P09429 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.72■■□□□ 1.23
HMGB1P09429 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.72■■□□□ 1.23
HMGB1P09429 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
HMGB1P09429 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.72■■□□□ 1.23
HMGB1P09429 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.72■■□□□ 1.23
HMGB1P09429 FP475955.4-201ENST00000623131 1990 ntBASIC22.72■■□□□ 1.23
HMGB1P09429 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGB1P09429 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
HMGB1P09429 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC22.72■■□□□ 1.23
HMGB1P09429 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.71■■□□□ 1.23
HMGB1P09429 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
HMGB1P09429 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC22.71■■□□□ 1.23
HMGB1P09429 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC22.71■■□□□ 1.23
HMGB1P09429 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.71■■□□□ 1.23
HMGB1P09429 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.71■■□□□ 1.23
HMGB1P09429 HTR7P1-201ENST00000538670 1336 ntBASIC22.71■■□□□ 1.23
HMGB1P09429 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.71■■□□□ 1.23
HMGB1P09429 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.71■■□□□ 1.23
HMGB1P09429 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
HMGB1P09429 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGB1P09429 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC22.71■■□□□ 1.23
HMGB1P09429 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
HMGB1P09429 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC22.7■■□□□ 1.22
HMGB1P09429 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
HMGB1P09429 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.7■■□□□ 1.22
HMGB1P09429 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.7■■□□□ 1.22
HMGB1P09429 RARRES2P10-201ENST00000564312 460 ntBASIC22.7■■□□□ 1.22
HMGB1P09429 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.7■■□□□ 1.22
HMGB1P09429 AL359736.2-201ENST00000621992 437 ntBASIC22.7■■□□□ 1.22
HMGB1P09429 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
HMGB1P09429 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 FEM1AP3-201ENST00000403722 1741 ntBASIC22.7■■□□□ 1.22
HMGB1P09429 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
HMGB1P09429 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.7■■□□□ 1.22
HMGB1P09429 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
HMGB1P09429 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms