Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TNFP01375 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
TNFP01375 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.83■□□□□ 0.6
TNFP01375 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.83■□□□□ 0.6
TNFP01375 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TNFP01375 KRT18P35-201ENST00000510488 1269 ntBASIC18.83■□□□□ 0.6
TNFP01375 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
TNFP01375 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.83■□□□□ 0.6
TNFP01375 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.83■□□□□ 0.6
TNFP01375 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.83■□□□□ 0.6
TNFP01375 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
TNFP01375 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.83■□□□□ 0.6
TNFP01375 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TNFP01375 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.83■□□□□ 0.6
TNFP01375 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
TNFP01375 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 DUX4L26-201ENST00000489078 1255 ntBASIC18.82■□□□□ 0.6
TNFP01375 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.82■□□□□ 0.6
TNFP01375 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 AL512604.3-201ENST00000569583 964 ntBASIC18.82■□□□□ 0.6
TNFP01375 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.82■□□□□ 0.6
TNFP01375 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.82■□□□□ 0.6
TNFP01375 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.82■□□□□ 0.6
TNFP01375 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
TNFP01375 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TNFP01375 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TNFP01375 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TNFP01375 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
TNFP01375 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.81■□□□□ 0.6
TNFP01375 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.81■□□□□ 0.6
TNFP01375 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.81■□□□□ 0.6
TNFP01375 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.81■□□□□ 0.6
TNFP01375 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.81■□□□□ 0.6
TNFP01375 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.81■□□□□ 0.6
TNFP01375 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TNFP01375 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.8■□□□□ 0.6
TNFP01375 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.8■□□□□ 0.6
TNFP01375 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.8■□□□□ 0.6
TNFP01375 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.8■□□□□ 0.6
TNFP01375 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TNFP01375 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TNFP01375 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.79■□□□□ 0.6
TNFP01375 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.79■□□□□ 0.6
TNFP01375 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TNFP01375 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 AK4P3-201ENST00000418260 669 ntBASIC18.79■□□□□ 0.6
TNFP01375 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.79■□□□□ 0.6
TNFP01375 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms