Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SIX3O95343 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SIX3O95343 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.83■□□□□ 0.61
SIX3O95343 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SIX3O95343 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SIX3O95343 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
SIX3O95343 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.83■□□□□ 0.6
SIX3O95343 UNC93B4-201ENST00000505679 747 ntBASIC18.83■□□□□ 0.6
SIX3O95343 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.83■□□□□ 0.6
SIX3O95343 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
SIX3O95343 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SIX3O95343 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.83■□□□□ 0.6
SIX3O95343 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.83■□□□□ 0.6
SIX3O95343 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
SIX3O95343 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SIX3O95343 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SIX3O95343 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
SIX3O95343 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 FP475955.4-201ENST00000623131 1990 ntBASIC18.82■□□□□ 0.6
SIX3O95343 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SIX3O95343 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 AL355802.2-201ENST00000402069 882 ntBASIC18.82■□□□□ 0.6
SIX3O95343 TUBB8P6-201ENST00000436895 1288 ntBASIC18.82■□□□□ 0.6
SIX3O95343 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.82■□□□□ 0.6
SIX3O95343 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SIX3O95343 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX3O95343 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 NEFHP1-201ENST00000412845 2629 ntBASIC18.81■□□□□ 0.6
SIX3O95343 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SIX3O95343 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SIX3O95343 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX3O95343 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX3O95343 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX3O95343 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.8■□□□□ 0.6
SIX3O95343 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 HLA-L-209ENST00000420110 1011 ntBASIC18.8■□□□□ 0.6
SIX3O95343 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX3O95343 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.8■□□□□ 0.6
SIX3O95343 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX3O95343 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SIX3O95343 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX3O95343 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms