Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC093827.2-201ENST00000512654 315 ntBASIC18.15■□□□□ 0.5
LDB3O75112 CD177P1-201ENST00000606252 935 ntBASIC18.15■□□□□ 0.5
LDB3O75112 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.15■□□□□ 0.5
LDB3O75112 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
LDB3O75112 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
LDB3O75112 AL032819.2-201ENST00000624543 2162 ntBASIC18.14■□□□□ 0.49
LDB3O75112 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.14■□□□□ 0.49
LDB3O75112 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.14■□□□□ 0.49
LDB3O75112 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.14■□□□□ 0.49
LDB3O75112 AP001412.1-201ENST00000608405 714 ntBASIC18.14■□□□□ 0.49
LDB3O75112 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LDB3O75112 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.14■□□□□ 0.49
LDB3O75112 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDB3O75112 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.14■□□□□ 0.49
LDB3O75112 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB3O75112 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB3O75112 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.13■□□□□ 0.49
LDB3O75112 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB3O75112 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 AC004980.1-204ENST00000429707 299 ntBASIC18.13■□□□□ 0.49
LDB3O75112 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.13■□□□□ 0.49
LDB3O75112 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.13■□□□□ 0.49
LDB3O75112 AC131212.4-201ENST00000623606 975 ntBASIC18.13■□□□□ 0.49
LDB3O75112 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.13■□□□□ 0.49
LDB3O75112 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB3O75112 AC005332.7-201ENST00000614046 2005 ntBASIC18.13■□□□□ 0.49
LDB3O75112 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB3O75112 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LDB3O75112 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.12■□□□□ 0.49
LDB3O75112 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.12■□□□□ 0.49
LDB3O75112 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB3O75112 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB3O75112 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB3O75112 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB3O75112 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.12■□□□□ 0.49
LDB3O75112 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB3O75112 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
LDB3O75112 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB3O75112 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 TSPY7P-201ENST00000431358 1114 ntBASIC18.11■□□□□ 0.49
LDB3O75112 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.11■□□□□ 0.49
LDB3O75112 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms