Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
CHMP2AO43633 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
CHMP2AO43633 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CHMP2AO43633 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 AC091390.4-202ENST00000476426 537 ntBASIC21.69■■□□□ 1.06
CHMP2AO43633 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.69■■□□□ 1.06
CHMP2AO43633 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.69■■□□□ 1.06
CHMP2AO43633 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.69■■□□□ 1.06
CHMP2AO43633 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.69■■□□□ 1.06
CHMP2AO43633 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.69■■□□□ 1.06
CHMP2AO43633 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP2AO43633 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
CHMP2AO43633 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 AC087499.1-201ENST00000418141 1075 ntBASIC21.68■■□□□ 1.06
CHMP2AO43633 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.68■■□□□ 1.06
CHMP2AO43633 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.68■■□□□ 1.06
CHMP2AO43633 AC130371.2-201ENST00000619443 611 ntBASIC21.68■■□□□ 1.06
CHMP2AO43633 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.68■■□□□ 1.06
CHMP2AO43633 KRT8P9-201ENST00000558927 1449 ntBASIC21.68■■□□□ 1.06
CHMP2AO43633 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP2AO43633 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CHMP2AO43633 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CHMP2AO43633 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.68■■□□□ 1.06
CHMP2AO43633 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CHMP2AO43633 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CHMP2AO43633 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.67■■□□□ 1.06
CHMP2AO43633 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP2AO43633 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP2AO43633 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CHMP2AO43633 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 KRT8P41-201ENST00000533985 1514 ntBASIC21.66■■□□□ 1.06
CHMP2AO43633 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 MMP23A-201ENST00000234610 1017 ntBASIC21.66■■□□□ 1.06
CHMP2AO43633 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 FAM207BP-201ENST00000447172 505 ntBASIC21.66■■□□□ 1.06
CHMP2AO43633 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP2AO43633 SLC25A1P4-201ENST00000567977 778 ntBASIC21.66■■□□□ 1.06
CHMP2AO43633 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP2AO43633 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CHMP2AO43633 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP2AO43633 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CHMP2AO43633 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CHMP2AO43633 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP2AO43633 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms