Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 AC018712.1-201ENST00000455767 687 ntBASIC14.99□□□□□ -0.01
COL6A5A8TX70 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 AC092364.2-202ENST00000597012 1073 ntBASIC14.99□□□□□ -0.01
COL6A5A8TX70 Z69720.1-201ENST00000601483 472 ntBASIC14.99□□□□□ -0.01
COL6A5A8TX70 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 DNAJB3-202ENST00000449667 1266 ntBASIC14.99□□□□□ -0.01
COL6A5A8TX70 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC14.99□□□□□ -0.01
COL6A5A8TX70 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 SEC1P-202ENST00000473944 940 ntBASIC14.98□□□□□ -0.01
COL6A5A8TX70 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 Z83836.1-201ENST00000624605 1642 ntBASIC14.98□□□□□ -0.01
COL6A5A8TX70 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 AC145285.3-201ENST00000564603 959 ntBASIC14.98□□□□□ -0.01
COL6A5A8TX70 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.98□□□□□ -0.01
COL6A5A8TX70 AC036111.1-201ENST00000533973 1582 ntBASIC14.98□□□□□ -0.01
COL6A5A8TX70 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A5A8TX70 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 IGHV3-47-201ENST00000425060 335 ntBASIC14.97□□□□□ -0.01
COL6A5A8TX70 DNAJB3-201ENST00000446806 729 ntBASIC14.97□□□□□ -0.01
COL6A5A8TX70 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 MIR3687-2-201ENST00000577708 61 ntBASIC14.97□□□□□ -0.01
COL6A5A8TX70 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 MIR3687-1-201ENST00000614492 61 ntBASIC14.97□□□□□ -0.01
COL6A5A8TX70 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL6A5A8TX70 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A5A8TX70 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 YBX2P1-201ENST00000394192 760 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms