Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AIRN-201ENST00000601203 4374 ntBASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 VMO1-204ENST00000441199 741 ntTSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 KRT18P20-201ENST00000548986 1279 ntBASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 MIR4466-201ENST00000606121 54 ntBASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV1-1A0A0B4J248 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 AC099398.1-201ENST00000567919 2776 ntBASIC15.05■□□□□ 0
TRAV1-1A0A0B4J248 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV1-1A0A0B4J248 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 SLC7A5P1-201ENST00000568957 537 ntBASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms