Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC108751.5-201ENST00000492880 1336 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 OR4K15-201ENST00000305051 1216 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 Y_RNA.18-201ENST00000362461 102 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RNA5SP191-201ENST00000362585 102 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RNU6-444P-201ENST00000383988 108 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RNU6-146P-201ENST00000384602 108 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RPL7P8-201ENST00000411964 730 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 USP9YP33-201ENST00000412220 421 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 PRELID3BP11-201ENST00000414230 479 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 HSFY4P-201ENST00000415994 1181 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RPS17P8-201ENST00000434525 335 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 USP9YP35-201ENST00000435696 412 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RPL7P11-201ENST00000437586 658 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 SLC25A18P1-201ENST00000449385 454 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC093824.1-201ENST00000508796 343 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC093281.2-201ENST00000510153 597 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC021146.3-201ENST00000511911 260 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 EIF5A2P1-201ENST00000564027 460 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC008507.1-201ENST00000587506 734 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 IMMP1LP1-201ENST00000605170 488 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AL121932.1-201ENST00000605542 214 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC106028.5-201ENST00000610332 395 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MLECP1-201ENST00000615893 709 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 SNX18P1Y-201ENST00000616231 511 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC068724.3-201ENST00000625906 87 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MTND5P24-201ENST00000438892 1767 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 NCLP2-201ENST00000416078 1462 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS4AQ9UN37 AC092104.1-201ENST00000497346 1441 ntBASIC4.55□□□□□ -1.68
VPS4AQ9UN37 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 XPOTP1-201ENST00000443317 2398 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 SNRPEP3-201ENST00000338402 276 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 RNU1-85P-201ENST00000364127 164 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AL080315.1-201ENST00000406055 466 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 TPMTP3-201ENST00000411928 735 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AC006366.1-201ENST00000422002 759 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 SDCBPP2-201ENST00000424643 885 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 TRIM60P18-201ENST00000441518 828 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 TDGF1P1-201ENST00000445734 527 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 ARL2BPP10-201ENST00000446487 531 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 OR6C5P-201ENST00000452388 923 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 APOOP2-201ENST00000461561 539 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 MTND4P2-201ENST00000507767 1203 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 RNU6-583P-201ENST00000516012 92 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AP001880.2-201ENST00000538233 448 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS4AQ9UN37 SULT1C2P1-202ENST00000562418 459 ntBASIC4.54□□□□□ -1.68
VPS4AQ9UN37 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms