Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 OR4C2P-201ENST00000530855 1064 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 ZNF321P-202ENST00000550843 495 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 AADACP1-206ENST00000561502 1193 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AC025627.2-201ENST00000576220 160 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC012417.1-201ENST00000582307 1039 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.06□□□□□ -1.76
MSH3P20585 DUXAP3-201ENST00000603616 594 ntBASIC4.06□□□□□ -1.76
MSH3P20585 RNU4-89P-201ENST00000607443 133 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AP004247.3-201ENST00000608682 624 ntBASIC4.06□□□□□ -1.76
MSH3P20585 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AP000255.1-201ENST00000610276 676 ntBASIC4.06□□□□□ -1.76
MSH3P20585 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 AC091304.6-201ENST00000619761 202 ntBASIC4.06□□□□□ -1.76
MSH3P20585 MIR6810-201ENST00000622701 70 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC017037.3-201ENST00000625016 472 ntBASIC4.06□□□□□ -1.76
MSH3P20585 CDRT1-208ENST00000630868 794 ntBASIC4.06□□□□□ -1.76
MSH3P20585 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 ASNSP1-204ENST00000641977 1664 ntBASIC4.06□□□□□ -1.76
MSH3P20585 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 MAPK10-373ENST00000641983 6772 ntBASIC4.05□□□□□ -1.76
MSH3P20585 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 LINC02471-203ENST00000641941 4752 ntBASIC4.05□□□□□ -1.76
MSH3P20585 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
MSH3P20585 NACA3P-201ENST00000359690 648 ntBASIC4.05□□□□□ -1.76
MSH3P20585 SNORD113-6-201ENST00000363345 75 ntBASIC4.05□□□□□ -1.76
MSH3P20585 RN7SKP44-201ENST00000363602 316 ntBASIC4.05□□□□□ -1.76
MSH3P20585 SFR1P1-201ENST00000403720 688 ntBASIC4.05□□□□□ -1.76
MSH3P20585 MTCO1P3-201ENST00000429327 192 ntBASIC4.05□□□□□ -1.76
MSH3P20585 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.05□□□□□ -1.76
MSH3P20585 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 HMGB1P16-201ENST00000447155 540 ntBASIC4.05□□□□□ -1.76
MSH3P20585 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 AC079776.3-201ENST00000450665 370 ntBASIC4.05□□□□□ -1.76
MSH3P20585 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 AC015724.1-201ENST00000478577 156 ntBASIC4.05□□□□□ -1.76
MSH3P20585 RPS27P23-201ENST00000487608 251 ntBASIC4.05□□□□□ -1.76
MSH3P20585 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.05□□□□□ -1.76
MSH3P20585 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 MTCO1P35-201ENST00000515270 228 ntBASIC4.05□□□□□ -1.76
MSH3P20585 RNU5A-4P-201ENST00000516588 111 ntBASIC4.05□□□□□ -1.76
MSH3P20585 RNU7-143P-201ENST00000516781 65 ntBASIC4.05□□□□□ -1.76
MSH3P20585 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.05□□□□□ -1.76
MSH3P20585 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH3P20585 MIR4697-201ENST00000582977 78 ntBASIC4.05□□□□□ -1.76
MSH3P20585 MIR5684-201ENST00000585074 65 ntBASIC4.05□□□□□ -1.76
MSH3P20585 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.05□□□□□ -1.76
MSH3P20585 AC025946.2-201ENST00000603398 234 ntBASIC4.05□□□□□ -1.76
MSH3P20585 AL591034.3-201ENST00000605511 685 ntBASIC4.05□□□□□ -1.76
MSH3P20585 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.05□□□□□ -1.76
MSH3P20585 AC112484.5-201ENST00000624189 228 ntBASIC4.05□□□□□ -1.76
MSH3P20585 MIR492-201ENST00000638676 116 ntBASIC4.05□□□□□ -1.76
MSH3P20585 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
MSH3P20585 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH3P20585 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
MSH3P20585 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 AC008725.1-201ENST00000605123 2263 ntBASIC4.04□□□□□ -1.76
MSH3P20585 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 RNA5SP130-201ENST00000364431 114 ntBASIC4.04□□□□□ -1.76
MSH3P20585 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 SNORA51.12-201ENST00000384448 134 ntBASIC4.04□□□□□ -1.76
MSH3P20585 SNORA3C-201ENST00000408792 125 ntBASIC4.04□□□□□ -1.76
MSH3P20585 HSPE1P12-201ENST00000412576 301 ntBASIC4.04□□□□□ -1.76
MSH3P20585 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.04□□□□□ -1.76
MSH3P20585 OR5BE1P-201ENST00000425977 939 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 FGF7P5-201ENST00000441829 291 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 EXTL2P1-201ENST00000446218 416 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 NECAP1P2-201ENST00000455668 727 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms