Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR4496-201ENST00000635896 61 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 RNU5B-4P-201ENST00000363508 111 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 RNA5SP51-201ENST00000364750 119 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 MIR708-201ENST00000390708 88 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 RPL21P17-201ENST00000397467 475 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 SNORA11-201ENST00000408789 128 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AL024507.1-201ENST00000412741 274 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 OR51A3P-201ENST00000413596 924 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 USP12PY-201ENST00000427677 1064 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 NDUFB1P1-201ENST00000435191 180 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC234064.1-201ENST00000436312 247 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AL645931.1-201ENST00000439737 410 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 BX276092.4-201ENST00000452056 248 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 SNORA84-201ENST00000459229 133 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC018635.1-201ENST00000468292 1030 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AP000893.1-201ENST00000474462 794 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC004069.2-201ENST00000505438 1114 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 SNX5P1-201ENST00000505757 1041 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC112206.4-201ENST00000515142 405 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 CENPUP2-201ENST00000555897 1186 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC006960.3-201ENST00000561845 705 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 MIR4504-201ENST00000577413 92 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC126365.2-201ENST00000580630 379 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 DNAJC19P3-201ENST00000594491 331 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC068620.3-201ENST00000602749 560 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 BRDTP1-201ENST00000605735 677 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 MIR4727-201ENST00000622232 55 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AP000553.6-201ENST00000641242 118 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AC119674.1-207ENST00000641355 633 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 BX649567.1-201ENST00000642071 1134 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 ZNF285B-201ENST00000561698 1767 ntBASIC3.75□□□□□ -1.81
LHX3Q9UBR4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.75□□□□□ -1.81
LHX3Q9UBR4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AL122126.1-201ENST00000546905 1318 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 NMD3P1-201ENST00000439704 1488 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 SNORA73.2-201ENST00000364946 201 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 MIR16-1-201ENST00000385271 89 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 MTND5P28-201ENST00000438005 1594 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 RPS15AP1-201ENST00000457423 391 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 S100A11P1-201ENST00000477525 312 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC093801.2-201ENST00000503966 1050 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC119751.1-201ENST00000513357 765 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC104115.2-201ENST00000523026 687 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms