Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC104090.1-201ENST00000506341 1171 ntBASIC4.7□□□□□ -1.66
CIITAP33076 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 RN7SKP21-201ENST00000516503 220 ntBASIC4.7□□□□□ -1.66
CIITAP33076 OR4C2P-201ENST00000530855 1064 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.7□□□□□ -1.66
CIITAP33076 AC010198.2-201ENST00000550612 259 ntBASIC4.7□□□□□ -1.66
CIITAP33076 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.7□□□□□ -1.66
CIITAP33076 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 AL158042.1-201ENST00000605338 460 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC099676.1-201ENST00000608886 657 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC023043.4-201ENST00000612081 449 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AL603755.1-201ENST00000619504 163 ntBASIC4.7□□□□□ -1.66
CIITAP33076 AC068831.8-201ENST00000620171 435 ntBASIC4.7□□□□□ -1.66
CIITAP33076 MIR7702-201ENST00000621931 59 ntBASIC4.7□□□□□ -1.66
CIITAP33076 RNA5SP196-201ENST00000625967 102 ntBASIC4.7□□□□□ -1.66
CIITAP33076 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.7□□□□□ -1.66
CIITAP33076 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CIITAP33076 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.7□□□□□ -1.66
CIITAP33076 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.7□□□□□ -1.66
CIITAP33076 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.7□□□□□ -1.66
CIITAP33076 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 OR10J6P-201ENST00000289731 930 ntBASIC4.69□□□□□ -1.66
CIITAP33076 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 RNU6-560P-201ENST00000364007 108 ntBASIC4.69□□□□□ -1.66
CIITAP33076 Y_RNA.465-201ENST00000384293 102 ntBASIC4.69□□□□□ -1.66
CIITAP33076 RNU1-13P-201ENST00000384499 162 ntBASIC4.69□□□□□ -1.66
CIITAP33076 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CIITAP33076 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 AC114814.2-201ENST00000419195 485 ntBASIC4.69□□□□□ -1.66
CIITAP33076 RPS27AP12-201ENST00000429552 465 ntBASIC4.69□□□□□ -1.66
CIITAP33076 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 RPL23AP76-201ENST00000441860 458 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 AC114755.5-201ENST00000447760 831 ntBASIC4.69□□□□□ -1.66
CIITAP33076 RSL24D1P3-201ENST00000449255 495 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 RPL5P32-201ENST00000454085 879 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 ANKRD26P4-201ENST00000455755 950 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AL133477.1-201ENST00000457472 514 ntBASIC4.69□□□□□ -1.66
CIITAP33076 RPL7AP28-201ENST00000464513 571 ntBASIC4.69□□□□□ -1.66
CIITAP33076 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 AC021146.8-201ENST00000507455 733 ntBASIC4.69□□□□□ -1.66
CIITAP33076 RN7SKP82-201ENST00000516786 223 ntBASIC4.69□□□□□ -1.66
CIITAP33076 HMGB1P23-201ENST00000518743 568 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.69□□□□□ -1.66
CIITAP33076 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.69□□□□□ -1.66
CIITAP33076 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.69□□□□□ -1.66
CIITAP33076 VN1R88P-201ENST00000596787 292 ntBASIC4.69□□□□□ -1.66
CIITAP33076 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 MIR6867-201ENST00000610636 67 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AL139418.1-201ENST00000613613 177 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AC243756.2-201ENST00000618406 463 ntBASIC4.69□□□□□ -1.66
CIITAP33076 AP005264.7-201ENST00000625003 745 ntBASIC4.69□□□□□ -1.66
CIITAP33076 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CIITAP33076 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 AL139811.1-201ENST00000424779 2299 ntBASIC4.69□□□□□ -1.66
CIITAP33076 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.69□□□□□ -1.66
CIITAP33076 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CIITAP33076 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CIITAP33076 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CIITAP33076 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
CIITAP33076 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.68□□□□□ -1.66
CIITAP33076 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CIITAP33076 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CIITAP33076 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CIITAP33076 RNA5SP130-201ENST00000364431 114 ntBASIC4.68□□□□□ -1.66
CIITAP33076 RNU11-4P-201ENST00000391149 133 ntBASIC4.68□□□□□ -1.66
CIITAP33076 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.68□□□□□ -1.66
CIITAP33076 RNU2-6P-201ENST00000411404 190 ntBASIC4.68□□□□□ -1.66
CIITAP33076 AC108032.1-201ENST00000416706 207 ntBASIC4.68□□□□□ -1.66
CIITAP33076 RPL30P3-201ENST00000424262 333 ntBASIC4.68□□□□□ -1.66
CIITAP33076 RPL7P44-201ENST00000424827 742 ntBASIC4.68□□□□□ -1.66
CIITAP33076 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.68□□□□□ -1.66
CIITAP33076 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.68□□□□□ -1.66
CIITAP33076 OR4C10P-201ENST00000434991 931 ntBASIC4.68□□□□□ -1.66
CIITAP33076 THAP5P1-201ENST00000439089 262 ntBASIC4.68□□□□□ -1.66
CIITAP33076 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CIITAP33076 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms