Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.12□□□□□ -1.91
HMGA1P17096 OR2AS1P-201ENST00000427827 319 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 RPL23AP22-201ENST00000437556 453 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 OR5H3P-201ENST00000502817 919 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 AC138409.2-202ENST00000507274 458 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 HIGD1AP3-201ENST00000515857 278 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 PDCD5P1-201ENST00000543528 309 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.12□□□□□ -1.91
HMGA1P17096 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.12□□□□□ -1.91
HMGA1P17096 MIR4644-201ENST00000579929 84 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.12□□□□□ -1.91
HMGA1P17096 AL139286.1-201ENST00000604465 483 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 AC022960.2-201ENST00000616300 666 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HMGA1P17096 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HMGA1P17096 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HMGA1P17096 RNU6-805P-201ENST00000365643 106 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 AC022018.1-201ENST00000430685 241 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.11□□□□□ -1.91
HMGA1P17096 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.11□□□□□ -1.91
HMGA1P17096 AC083906.5-201ENST00000503722 328 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 PRELID3BP6-201ENST00000503839 571 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HMGA1P17096 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.11□□□□□ -1.91
HMGA1P17096 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.11□□□□□ -1.91
HMGA1P17096 OR5G4P-201ENST00000525251 760 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 AC107918.3-201ENST00000533272 382 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.11□□□□□ -1.91
HMGA1P17096 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.11□□□□□ -1.91
HMGA1P17096 AL137072.1-201ENST00000603444 466 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.11□□□□□ -1.91
HMGA1P17096 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HMGA1P17096 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
HMGA1P17096 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HMGA1P17096 AL049555.1-201ENST00000562834 1933 ntBASIC3.11□□□□□ -1.91
HMGA1P17096 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HMGA1P17096 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.1□□□□□ -1.91
HMGA1P17096 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
HMGA1P17096 OR5J1P-201ENST00000313544 939 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 RNA5SP383-201ENST00000362934 120 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 SNORD56.3-201ENST00000363507 71 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
HMGA1P17096 SNORA68.2-201ENST00000391263 128 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 RNA5SP293-201ENST00000410527 113 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGA1P17096 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 IPMKP1-201ENST00000425988 855 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 AL445528.1-201ENST00000426330 420 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 AC008065.1-201ENST00000428525 348 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 AC026801.2-201ENST00000515352 425 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 SNORA64.4-201ENST00000516632 81 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGA1P17096 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGA1P17096 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.1□□□□□ -1.91
HMGA1P17096 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGA1P17096 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGA1P17096 AC007566.2-201ENST00000603642 413 ntBASIC3.1□□□□□ -1.91
HMGA1P17096 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HMGA1P17096 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.1□□□□□ -1.91
HMGA1P17096 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HMGA1P17096 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HMGA1P17096 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.09□□□□□ -1.91
HMGA1P17096 RNU6-729P-201ENST00000384399 107 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 RPS7P13-201ENST00000413955 498 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 RPL32P35-201ENST00000415214 394 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.09□□□□□ -1.91
HMGA1P17096 RPS12P23-201ENST00000419579 400 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.09□□□□□ -1.91
HMGA1P17096 AC236972.1-201ENST00000433225 199 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HMGA1P17096 AC105402.2-201ENST00000438503 358 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.09□□□□□ -1.91
HMGA1P17096 HMGB3P6-201ENST00000444896 598 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.09□□□□□ -1.91
HMGA1P17096 AL136097.1-201ENST00000456945 913 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 RPL23AP14-201ENST00000468281 468 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 HIGD1AP13-201ENST00000509878 289 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC091826.1-201ENST00000514065 313 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.09□□□□□ -1.91
HMGA1P17096 AL358913.1-201ENST00000554342 121 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC245100.7-201ENST00000609678 442 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.09□□□□□ -1.91
HMGA1P17096 AC019080.5-201ENST00000624891 757 ntBASIC3.09□□□□□ -1.91
HMGA1P17096 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
HMGA1P17096 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HMGA1P17096 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.08□□□□□ -1.92
HMGA1P17096 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HMGA1P17096 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HMGA1P17096 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HMGA1P17096 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HMGA1P17096 SNORA5B-201ENST00000363786 132 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms