Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SNORA4.1-201ENST00000364263 144 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 SNORA51.12-201ENST00000384448 134 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RN7SKP142-201ENST00000411236 328 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 TPMTP3-201ENST00000411928 735 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 PGBD4P8-201ENST00000412993 562 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 CDK8P2-201ENST00000415020 547 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AL590139.1-201ENST00000416267 400 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AL645608.4-201ENST00000423619 154 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 NPM1P24-201ENST00000428039 894 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RPL7P4-203ENST00000430239 730 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RPS17P8-201ENST00000434525 335 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AL451139.1-201ENST00000434718 346 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC005154.2-201ENST00000438110 379 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC010733.1-201ENST00000451515 401 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 HMGB3P21-201ENST00000452483 547 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RPL5P32-201ENST00000454085 879 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 SRRM1P2-201ENST00000464531 1192 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 S100A11P1-201ENST00000477525 312 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC072039.1-201ENST00000477611 581 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 IGLV2-34-201ENST00000490007 283 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC005912.1-201ENST00000495392 255 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC104685.1-201ENST00000502445 371 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 SLC25A15P5-201ENST00000508033 253 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC048346.1-201ENST00000510247 144 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 VWA8P1-201ENST00000510889 176 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RN7SKP276-201ENST00000516242 268 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RNU6-709P-201ENST00000517257 104 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC090281.1-201ENST00000523019 276 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 OR5AK1P-201ENST00000524837 922 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 OR7K1P-201ENST00000546439 926 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 NPM1P47-201ENST00000560843 856 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 ATP5J2P6-201ENST00000565203 266 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 MIR5699-201ENST00000578903 90 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 RPL26P30-202ENST00000602923 645 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 U73023.1-201ENST00000603134 700 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC073648.5-201ENST00000603502 305 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 FAM27B-201ENST00000610601 213 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC073968.1-201ENST00000618594 637 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC009643.2-201ENST00000603543 1448 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 KPNA2P2-201ENST00000419546 1489 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 ASNSP1-204ENST00000641977 1664 ntBASIC4.85□□□□□ -1.63
DKK3Q9UBP4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
DKK3Q9UBP4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AL592437.2-201ENST00000421655 2434 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 RNU6-1066P-201ENST00000363573 105 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 RNU1-32P-201ENST00000363937 159 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 RNU2-42P-201ENST00000410697 113 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 DNAJC19P7-201ENST00000428811 344 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 RPS25P9-201ENST00000435591 252 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 Z74696.2-201ENST00000436514 498 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 TRIM60P18-201ENST00000441518 828 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 KATNBL1P6-201ENST00000453433 915 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AL513533.1-201ENST00000453728 415 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC006967.1-201ENST00000467608 589 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 PRELID3BP7-201ENST00000503606 469 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms