Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.84□□□□□ -1.8
COL5A3P25940 CYCSP39-201ENST00000565821 309 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 AL365400.2-201ENST00000605604 902 ntBASIC3.84□□□□□ -1.8
COL5A3P25940 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.84□□□□□ -1.8
COL5A3P25940 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
COL5A3P25940 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
COL5A3P25940 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.83□□□□□ -1.8
COL5A3P25940 SCN1A-220ENST00000641603 12506 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL5A3P25940 RN7SKP247-201ENST00000411094 308 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 GLRXP1-201ENST00000423261 334 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 AL133477.1-201ENST00000457472 514 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 AC090543.2-201ENST00000483963 348 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A3P25940 RFPL4AP5-201ENST00000514977 504 ntBASIC3.83□□□□□ -1.8
COL5A3P25940 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A3P25940 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.83□□□□□ -1.8
COL5A3P25940 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.83□□□□□ -1.8
COL5A3P25940 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.83□□□□□ -1.8
COL5A3P25940 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.83□□□□□ -1.8
COL5A3P25940 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL5A3P25940 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A3P25940 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 RNU6-859P-201ENST00000362728 107 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A3P25940 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A3P25940 RNU6-55P-201ENST00000411092 107 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 RNU6-954P-201ENST00000411355 107 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A3P25940 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.82□□□□□ -1.8
COL5A3P25940 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.82□□□□□ -1.8
COL5A3P25940 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.82□□□□□ -1.8
COL5A3P25940 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.82□□□□□ -1.8
COL5A3P25940 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A3P25940 AL049844.2-201ENST00000604280 628 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A3P25940 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A3P25940 AC005332.5-201ENST00000591222 2919 ntBASIC3.82□□□□□ -1.8
COL5A3P25940 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A3P25940 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 RANP4-201ENST00000413361 655 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC128713.1-201ENST00000471495 306 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL5A3P25940 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 uc_338.1-201ENST00000612113 180 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 AL022311.1-201ENST00000623726 19416 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A3P25940 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A3P25940 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL5A3P25940 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A3P25940 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A3P25940 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A3P25940 BMS1P22-201ENST00000414726 313 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 OOSP1P1-201ENST00000423265 274 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC022018.1-201ENST00000430685 241 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A3P25940 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A3P25940 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A3P25940 MTCO3P20-201ENST00000454926 688 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 RN7SL432P-201ENST00000484057 298 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.81□□□□□ -1.8
COL5A3P25940 OR5G4P-201ENST00000525251 760 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 AC079600.2-201ENST00000550076 130 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 AC067852.4-201ENST00000590314 478 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 AC019080.5-201ENST00000624891 757 ntBASIC3.81□□□□□ -1.8
COL5A3P25940 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A3P25940 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A3P25940 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A3P25940 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A3P25940 AC087190.4-201ENST00000574616 8334 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.8□□□□□ -1.8
COL5A3P25940 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A3P25940 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.8□□□□□ -1.8
COL5A3P25940 DUTP6-201ENST00000425573 462 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.8□□□□□ -1.8
COL5A3P25940 RPS6P2-201ENST00000454208 705 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.8□□□□□ -1.8
COL5A3P25940 ELOCP29-201ENST00000588193 334 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL5A3P25940 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL5A3P25940 AC005183.1-201ENST00000603687 1979 ntBASIC3.8□□□□□ -1.8
COL5A3P25940 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A3P25940 GABRG2-229ENST00000641017 3628 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms