Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 SCARNA17.4-201ENST00000614296 143 ntBASIC3.11□□□□□ -1.91
VCANP13611 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.11□□□□□ -1.91
VCANP13611 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
VCANP13611 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 OR1S2-201ENST00000302592 978 ntBASIC3.11□□□□□ -1.91
VCANP13611 RNA5SP289-201ENST00000362332 137 ntBASIC3.11□□□□□ -1.91
VCANP13611 NPM1P37-201ENST00000403105 874 ntBASIC3.11□□□□□ -1.91
VCANP13611 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.11□□□□□ -1.91
VCANP13611 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.11□□□□□ -1.91
VCANP13611 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.11□□□□□ -1.91
VCANP13611 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.11□□□□□ -1.91
VCANP13611 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC3.11□□□□□ -1.91
VCANP13611 AC007390.2-201ENST00000606229 3803 ntBASIC3.11□□□□□ -1.91
VCANP13611 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.11□□□□□ -1.91
VCANP13611 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 SNORD15B-201ENST00000384714 146 ntBASIC3.11□□□□□ -1.91
VCANP13611 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.11□□□□□ -1.91
VCANP13611 THAP12P8-201ENST00000447914 2115 ntBASIC3.11□□□□□ -1.91
VCANP13611 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.11□□□□□ -1.91
VCANP13611 RPL31P13-201ENST00000484151 370 ntBASIC3.11□□□□□ -1.91
VCANP13611 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC3.11□□□□□ -1.91
VCANP13611 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VCANP13611 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 AL513302.2-201ENST00000562313 1842 ntBASIC3.1□□□□□ -1.91
VCANP13611 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VCANP13611 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC3.1□□□□□ -1.91
VCANP13611 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC3.1□□□□□ -1.91
VCANP13611 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 RPL23AP36-201ENST00000413895 458 ntBASIC3.1□□□□□ -1.91
VCANP13611 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VCANP13611 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
VCANP13611 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.1□□□□□ -1.91
VCANP13611 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.09□□□□□ -1.91
VCANP13611 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
VCANP13611 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.09□□□□□ -1.91
VCANP13611 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.09□□□□□ -1.91
VCANP13611 SERPINE4P-201ENST00000554978 281 ntBASIC3.09□□□□□ -1.91
VCANP13611 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.09□□□□□ -1.91
VCANP13611 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.09□□□□□ -1.91
VCANP13611 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.09□□□□□ -1.91
VCANP13611 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VCANP13611 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
VCANP13611 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
VCANP13611 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
VCANP13611 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
VCANP13611 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.92
VCANP13611 AC112653.1-201ENST00000443851 386 ntBASIC3.09□□□□□ -1.92
VCANP13611 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.09□□□□□ -1.92
VCANP13611 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
VCANP13611 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 AC007336.1-201ENST00000576365 3828 ntBASIC3.08□□□□□ -1.92
VCANP13611 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.08□□□□□ -1.92
VCANP13611 AC073325.2-201ENST00000339545 159 ntBASIC3.08□□□□□ -1.92
VCANP13611 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 RNU6-76P-201ENST00000384060 104 ntBASIC3.08□□□□□ -1.92
VCANP13611 EIF4EP1-201ENST00000422311 642 ntBASIC3.08□□□□□ -1.92
VCANP13611 ELOCP23-201ENST00000452014 332 ntBASIC3.08□□□□□ -1.92
VCANP13611 MTND4P2-201ENST00000507767 1203 ntBASIC3.08□□□□□ -1.92
VCANP13611 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.08□□□□□ -1.92
VCANP13611 PLCE1P1-201ENST00000622094 305 ntBASIC3.08□□□□□ -1.92
VCANP13611 AC099506.2-201ENST00000623074 221 ntBASIC3.08□□□□□ -1.92
VCANP13611 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.08□□□□□ -1.92
VCANP13611 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VCANP13611 RNA5SP52-201ENST00000362448 134 ntBASIC3.08□□□□□ -1.92
VCANP13611 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.08□□□□□ -1.92
VCANP13611 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.08□□□□□ -1.92
VCANP13611 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.08□□□□□ -1.92
VCANP13611 SEC11B-201ENST00000518383 499 ntBASIC3.08□□□□□ -1.92
VCANP13611 AC009570.1-201ENST00000609599 745 ntBASIC3.08□□□□□ -1.92
VCANP13611 AC022509.4-201ENST00000621404 572 ntBASIC3.08□□□□□ -1.92
VCANP13611 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC3.08□□□□□ -1.92
VCANP13611 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.08□□□□□ -1.92
VCANP13611 ELOCP8-201ENST00000439309 332 ntBASIC3.08□□□□□ -1.92
VCANP13611 ELOCP15-201ENST00000442090 332 ntBASIC3.08□□□□□ -1.92
VCANP13611 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.08□□□□□ -1.92
VCANP13611 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.08□□□□□ -1.92
VCANP13611 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.08□□□□□ -1.92
VCANP13611 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.08□□□□□ -1.92
VCANP13611 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms